Search result

BaseInfo

ncRNA ID	novel_gma_miR3504
Species	Glycine max
Class	miRNA
Genome position	Chr20:36826891-36827004 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	95 - AGGGACAAAAAUGAAAAAAA - 114
Stem-loop(if miRNA)	----         AA         A  UUU U    UUUG         -CU UG  A     UUUCAUUUU  UUCUUAUAA AU   G UCAU    UAUUAGUUC   U  AA A     |||||||||  ||||||||| ||   | ||||    |||||||||   |  || A     AAAGUAAAA  AGGGAUAUU UA   C AGUA    AUAAUCAGG   A  UU U AAAA         AC         A  UAU U    CACA         AAU GU  A
Stem-loop sequence	UUUCAUUUUAAUUCUUAUAAAAUUUUGUUCAUUUUGUAUUAGUUCCUUUGAAAAAUAUUUGAUAAGGACUAAUAACACAUGAUCUAUAUAUUAUAGGGACAAAAAUGAAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003527391.2	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   |||||||||||||||||||| targets:563   UUUUUUUCAUUUUUGUCCCU   582 Target Full Sequence	0.0	PREDICTED: Glycine max uncharacterized LOC100810092 (LOC100810092), partial mRNA	uncharacterized LOC100810092(LOC100810092)	coding protein	psRNATarget
BT098414.1	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   *||||||=|||||||||||* targets:179   CUUUUUUUAUUUUUGUCCCC   198 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12O10 unknown mRNA	NA	coding protein	psRNATarget
XM_006575251.2	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   |||*||||||||||*||||| targets:2966   UUUCUUUCAUUUUUUUCCCU   2985 Target Full Sequence	2.5	PREDICTED: Glycine max eukaryotic translation initiation factor isoform 4G-1-like (LOC100789296), mRNA	eukaryotic translation initiation factor isoform 4G-1-like(LOC100789296)	coding protein	psRNATarget
XM_006589362.2	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   ||*|||||||||||*||||| targets:1792   UUCUUUUCAUUUUUUUCCCU   1811 Target Full Sequence	2.5	PREDICTED: Glycine max GATA transcription factor 8-like (LOC100815693), transcript variant X1, mRNA	GATA transcription factor 8-like(LOC100815693)	coding protein	psRNATarget
XM_003536302.3	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   ||*|||||||||||*||||| targets:1676   UUCUUUUCAUUUUUUUCCCU   1695 Target Full Sequence	2.5	PREDICTED: Glycine max GATA transcription factor 8-like (LOC100815693), transcript variant X2, mRNA	GATA transcription factor 8-like(LOC100815693)	coding protein	psRNATarget
XM_006589363.2	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   ||*|||||||||||*||||| targets:1478   UUCUUUUCAUUUUUUUCCCU   1497 Target Full Sequence	2.5	PREDICTED: Glycine max GATA transcription factor 8-like (LOC100815693), transcript variant X3, mRNA	GATA transcription factor 8-like(LOC100815693)	coding protein	psRNATarget
BT091189.1	ncRNA:20   AAAAAAAGUAAAAACAGGGA   1   |||||*||||||||*||||| targets:94   UUUUUAUCAUUUUUCUCCCU   113 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-7I20 unknown mRNA	NA	coding protein	psRNATarget