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BaseInfo

ncRNA ID novel_gma_miR3499
Species Glycine max
Class miRNA
Genome position Chr20:9305102-9305202 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - CCGUAAGAAGAAAAACAAGC - 20
Stem-loop(if miRNA) --                A                               
  UUGUUUUUCUUCUUAC GAUCAAGGUGAUCCGUACGUUGAUCUGUAAGA
  |||||||||||||||| |||||||||||||||||||||||||||||||C
  AACAAAAAGAAGAAUG CUAGUUCCACUAGGCAUGCAACUAGGUAUUCA
CG                C                               
Stem-loop sequence UUGUUUUUCUUCUUACAGAUCAAGGUGAUCCGUACGUUGAUCUGUAAGACACUUAUGGAUCAACGUACGGAUCACCUUGAUCCGUAAGAAGAAAAACAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768296.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X3, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_014768295.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X2, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_014768294.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X1, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_014768297.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X4, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_014768298.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X5, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_014768299.1
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||=|||||||||
targets:1950   UCUUUUUUUUUUUCUUACGG   1969

2.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase RING1-like (LOC100785893), transcript variant X6, mRNA E3 ubiquitin-protein ligase RING1-like(LOC100785893) coding protein psRNATarget
XM_006576929.2
ncRNA:20   CGAACAAAAAGAAGAAUGCC   1
  *|||*|||||||||||*|||
targets:8   UCUUCUUUUUCUUCUUUCGG   27

2.5 PREDICTED: Glycine max phosphatidate phosphatase PAH1-like (LOC102662325), transcript variant X1, mRNA phosphatidate phosphatase PAH1-like(LOC102662325) coding protein psRNATarget
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