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BaseInfo

ncRNA ID novel_gma_miR3497
Species Glycine max
Class miRNA
Genome position Chr20:23823899-23823993 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - UUUUCUCUACUUUUAAUCUC - 20
Stem-loop(if miRNA) --      UGAGUU      --U      GAGA   -       AG A   G
  GAUUAG      GUAGAG   GAUUGU    UGC UGAGAAG  G GGA G
  ||||||      ||||||   ||||||    ||| |||||||  | |||
  CUAAUU      CAUCUC   UUGACG    AUG GUUCUUC  C CCU G
CU      ----UU      UUU      AGGA   U       -G -   A
Stem-loop sequence GAUUAGUGAGUUGUAGAGUGAUUGUGAGAUGCUGAGAAGAGGAGGAGGGAUCCCGCUUCUUGUGUAAGGAGCAGUUUUUCUCUACUUUUAAUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003543807.3
ncRNA:20   CUCUAAUUUUCAUCUCUUUU   1
  *|||||||||*||||||||*
targets:1305   CAGAUUAAAAUUAGAGAAAC   1324

2.5 PREDICTED: Glycine max NAC domain-containing protein 100-like (LOC100781383), mRNA NAC domain-containing protein 100-like(LOC100781383) coding protein psRNATarget
XM_003546196.3
ncRNA:20   CUCUAAUUUUCAUCUCUUUU   1
  **|||||||||||*||||||
targets:271   UUGAUUAAAAGUAAAGAAAA   290

2.5 PREDICTED: Glycine max katanin p60 ATPase-containing subunit A1-like (LOC100801219), mRNA katanin p60 ATPase-containing subunit A1-like(LOC100801219) coding protein psRNATarget
XM_003547064.3
ncRNA:20   CUCUAAUUUUCAUCUCUUUU   1
  |*||*||||||||||||||=
targets:589   GCGACUAAAAGUAGAGAAAG   608

3.0 PREDICTED: Glycine max transcription factor ILR3-like (LOC100790993), mRNA transcription factor ILR3-like(LOC100790993) coding protein psRNATarget