Search result

BaseInfo

ncRNA ID	novel_gma_miR3494
Species	Glycine max
Class	miRNA
Genome position	Chr20:39885059-39885144 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	67 - UUAGAAUUAGAGUUUUAUUU - 86
Stem-loop(if miRNA)	--U                 UU  --AAAAU   CAUAA           UAGAAUUAGAGUUUUAU  CA       CUG     UAAAUGUU    |||||||||||||||||  ||       |||     |||||||U    GUCUUAAUCUUAAAGUG  GU       GAC     AUUUAUAU UUU                 UU  AACCCUU   -----
Stem-loop sequence	UUAGAAUUAGAGUUUUAUUUCAAAAAUCUGCAUAAUAAAUGUUUUAUAUUUACAGUUCCCAAUGUUGUGAAAUUCUAAUUCUGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014771412.1	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   *||||*|||||||||||||* targets:2038   CAAUAUAACUCUAAUUCUAU   2057 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC102659863 (LOC102659863), mRNA	uncharacterized LOC102659863(LOC102659863)	coding protein	psRNATarget
XM_003520847.3	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   *||||*|||||||||||||* targets:1949   CAAUAUAACUCUAAUUCUAU   1968 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100785776 (LOC100785776), mRNA	uncharacterized LOC100785776(LOC100785776)	coding protein	psRNATarget
XM_003522284.3	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |=||||||||||||||=||| targets:558   AGAUAAAACUCUAAUUUUAA   577 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor PRE4-like (LOC100790746), mRNA	transcription factor PRE4-like(LOC100790746)	coding protein	psRNATarget
XM_003528141.3	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |=||||||||||||||=||| targets:620   AGAUAAAACUCUAAUUUUAA   639 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor ILI4-like (LOC100810266), mRNA	transcription factor ILI4-like(LOC100810266)	coding protein	psRNATarget
XM_003534311.3	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   ||=|||||||||||||||=| targets:2018   AAGUAAAACUCUAAUUCUGA   2037 Target Full Sequence	2.5	PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA	amidophosphoribosyltransferase, chloroplastic-like(LOC100791919)	coding protein	psRNATarget
EU019591.1	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |==|=||||||||||||||| targets:1111   AGGUGAAACUCUAAUUCUAA   1130 Target Full Sequence	3.0	Glycine max transcription factor (WRKY62) mRNA, partial cds	NA	coding protein	psRNATarget
XM_014773701.1	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   ||=|=||||||||||||||= targets:1139   AAGUGAAACUCUAAUUCUAG   1158 Target Full Sequence	3.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100804317), transcript variant X1, mRNA	UPF0481 protein At3g47200-like(LOC100804317)	coding protein	psRNATarget
XM_014769389.1	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |=||=|=||||||||||||| targets:903   AGAUGAGACUCUAAUUCUAA   922 Target Full Sequence	3.0	PREDICTED: Glycine max DUF21 domain-containing protein At1g47330-like (LOC100799833), transcript variant X2, mRNA	DUF21 domain-containing protein At1g47330-like(LOC100799833)	coding protein	psRNATarget
XM_006601064.2	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |=||=|=||||||||||||| targets:902   AGAUGAGACUCUAAUUCUAA   921 Target Full Sequence	3.0	PREDICTED: Glycine max DUF21 domain-containing protein At1g47330-like (LOC100799833), transcript variant X1, mRNA	DUF21 domain-containing protein At1g47330-like(LOC100799833)	coding protein	psRNATarget
AK245515.1	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |==|=||||||||||||||| targets:1907   AGGUGAAACUCUAAUUCUAA   1926 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-32-M12	NA	coding protein	psRNATarget
XM_003551152.3	ncRNA:20   UUUAUUUUGAGAUUAAGAUU   1   |==|=||||||||||||||| targets:2012   AGGUGAAACUCUAAUUCUAA   2031 Target Full Sequence	3.0	PREDICTED: Glycine max probable WRKY transcription factor 26 (LOC100127397), mRNA	probable WRKY transcription factor 26(LOC100127397)	coding protein	psRNATarget