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BaseInfo

ncRNA ID novel_gma_miR3492
Species Glycine max
Class miRNA
Genome position Chr20:44325547-44325614 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - CAGUCCAUCUUGGCAAAGCU - 20
Stem-loop(if miRNA) --C       CU     ----      ---AAA    U
   AGUCCAU  UGGCA    AAGCUA      ACUC C
   |||||||  |||||    ||||||      |||| A
   UCAGGUA  AUCGU    UUCGAU      UGGG A
CAC       --     AAGU      CGGUAA    U
Stem-loop sequence CAGUCCAUCUUGGCAAAGCUAAAAACUCUCAAUGGGUAAUGGCUAGCUUUGAAUGCUAAUGGACUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT092794.1
ncRNA:20   UCGAAACGGUUCUACCUGAC   1
  **|||||||||||*||||||
targets:124   CCCUUUGCCAAGAAGGACUG   143

2.5 Soybean clone JCVI-FLGm-11D2 unknown mRNA NA coding protein psRNATarget
NM_001254076.2
ncRNA:20   UCGAAACGGUUCUACCUGAC   1
  **|||||||||||*||||||
targets:126   CCCUUUGCCAAGAAGGACUG   145

2.5 Glycine max 40S ribosomal protein S3a-like (LOC100805519), mRNA 40S ribosomal protein S3a-like(LOC100805519) coding protein psRNATarget
BT098700.1
ncRNA:20   UCGAAACGGUUCUACCUGAC   1
  **|||||||||||*||||||
targets:128   CCCUUUGCCAAGAAGGACUG   147

2.5 Soybean clone JCVI-FLGm-23I10 unknown mRNA NA coding protein psRNATarget
BT093927.1
ncRNA:20   UCGAAACGGUUCUACCUGAC   1
  **|||||||||||*||||||
targets:205   CCCUUUGCCAAGAAGGACUG   224

2.5 Soybean clone JCVI-FLGm-17N24 unknown mRNA NA coding protein psRNATarget