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BaseInfo

ncRNA ID novel_gma_miR3486
Species Glycine max
Class miRNA
Genome position Chr19:46127457-46127649 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 174 - GACAAAAUUUAGAUGCAGUU - 193
Stem-loop(if miRNA) --GAC    UU      C         U  AC      -   UAUUUUAACAUU         A                  UACAAUGAA    U    U
     AAAA  UAGAUG AGUUUCUUA AU  UUUAAG AAC            AGAAUUGGA UUUUAUUUUAGUAAUUCA         AGUU ACAU A
     ||||  |||||| ||||||||| ||  |||||| |||            ||||||||| ||||||||||||||||||         |||| |||| A
     UUUU  AUCUAC UCAAGGGAU UA  AAAUUC UUG            UUUUAACUU AAAGUAGAGUUAUUGGGU         UCAA UGUG A
UUUUU    UU      A         U  CA      G   UAACGCGUUAAU         C                  ---------    U    U
Stem-loop sequence GACAAAAUUUAGAUGCAGUUUCUUAUAUACUUUAAGAACUAUUUUAACAUUAGAAUUGGAAUUUUAUUUUAGUAAUUCAUACAAUGAAAGUUUACAUUAAAUGUGUUAACUUGGGUUAUUGAGAUGAAACUUCAAUUUUUAAUUGCGCAAUGUUGCUUAAAACAUUUAGGGAACUACAUCUAUUUUUUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JN201532.1
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||||||||||||||||=
targets:267   AACUGCAUCUAAAUUUUGUU   286

1.0 Glycine max clone Gm4-2 mRNA sequence NA coding protein psRNATarget
XM_003519237.3
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||=||||||||||||||
targets:1826   AACUGUAUCUAAAUUUUGUC   1845

1.0 PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016) coding protein psRNATarget
XM_003553310.3
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||=||||||=|||||||
targets:2091   AACUGUAUCUAAGUUUUGUC   2110

2.5 PREDICTED: Glycine max probable arabinosyltransferase ARAD1 (LOC100793373), mRNA probable arabinosyltransferase ARAD1(LOC100793373) coding protein psRNATarget
XM_003540810.3
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||=||||||=|||||||
targets:3325   AACUGUAUCUAAGUUUUGUC   3344

2.5 PREDICTED: Glycine max formin-like protein 3 (LOC100816477), mRNA formin-like protein 3(LOC100816477) coding protein psRNATarget
XM_014776818.1
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||=||||||=|||||||
targets:3436   AACUGUAUCUAAGUUUUGUC   3455

2.5 PREDICTED: Glycine max formin-like protein 3 (LOC100780844), mRNA formin-like protein 3(LOC100780844) coding protein psRNATarget
BT095961.1
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  ||||||||||||=||||||*
targets:635   AACUGCAUCUAAGUUUUGUA   654

2.5 Soybean clone JCVI-FLGm-15G2 unknown mRNA NA coding protein psRNATarget
XM_003522635.3
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  ||||||||||||=||||||*
targets:722   AACUGCAUCUAAGUUUUGUA   741

2.5 PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA uncharacterized LOC100798503(LOC100798503) coding protein psRNATarget
BT098239.1
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  ||||||||||||||||*||=
targets:299   AACUGCAUCUAAAUUUCGUU   318

2.5 Soybean clone JCVI-FLGm-12O15 unknown mRNA NA coding protein psRNATarget
JN201531.1
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  ||||||||||||||||*||=
targets:317   AACUGCAUCUAAAUUUCGUU   336

2.5 Glycine max clone Gm4-1 mRNA sequence NA coding protein psRNATarget
XM_003534311.3
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||=||||||||*|||||
targets:2066   AACUGUAUCUAAAUCUUGUC   2085

2.5 PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA amidophosphoribosyltransferase, chloroplastic-like(LOC100791919) coding protein psRNATarget
XM_006585935.2
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||*||||||=|||||||
targets:360   AACUGGAUCUAAGUUUUGUC   379

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X3, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
XM_006585934.2
ncRNA:20   UUGACGUAGAUUUAAAACAG   1
  |||||*||||||=|||||||
targets:360   AACUGGAUCUAAGUUUUGUC   379

2.5 PREDICTED: Glycine max mucin-21-like (LOC100790656), transcript variant X2, mRNA mucin-21-like(LOC100790656) coding protein psRNATarget
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