Search result

BaseInfo

ncRNA ID	novel_gma_miR3478
Species	Glycine max
Class	miRNA
Genome position	Chr18:4399301-4399441 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	1 - UUACAAAAUAAUGAUAAUAG - 20
Stem-loop(if miRNA)	--AC      C     A    AA    CC    -           --  UUU  CAAUUGUAUUUACUAAAUU     UAUCAU AUUUU UAAA  UAUU  CUAA UUUUUUUUGUG  CA   CA                   U     |||||| ||||| ||||  ||||  |||| |||||||||||  ||   ||                   U     AUAGUA UAAAA AUUU  AUAG  GAUU AAAAAAAACAU  AA   UA                   G GAUA      A     C    AG    UA    C           AG  ---  AUAGUAUUAAAAGUUAUGU
Stem-loop sequence	ACUAUCAUCAUUUUAUAAAAAUAUUCCCUAAUUUUUUUUGUGCAUUUCACAAUUGUAUUUACUAAAUUUUGUGUAUUGAAAAUUAUGAUAAUAAGAUACAAAAAAAACUUAGAUGAUAGAUUUACAAAAUAAUGAUAAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003533811.3	ncRNA:20   GAUAAUAGUAAUAAAACAUU   1   =||||||=|||||||||||* targets:1088   UUAUUAUUAUUAUUUUGUAU   1107 Target Full Sequence	2.5	PREDICTED: Glycine max bromodomain and WD repeat-containing DDB_G0285837-like (LOC100793487), mRNA	bromodomain and WD repeat-containing DDB_G0285837-like(LOC100793487)	coding protein	psRNATarget
NM_001249350.2	ncRNA:20   GAUAAUAGUAAUAAAACAUU   1   =||||||=|||||||||||* targets:845   UUAUUAUUAUUAUUUUGUAU   864 Target Full Sequence	2.5	Glycine max remorin family protein (LOC100305501), mRNA	uncharacterized LOC100305501(LOC100305501)	coding protein	psRNATarget
BT089121.1	ncRNA:20   GAUAAUAGUAAUAAAACAUU   1   =||||||=|||||||||||* targets:692   UUAUUAUUAUUAUUUUGUAU   711 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-1K21 unknown mRNA	NA	coding protein	psRNATarget
XM_003517191.3	ncRNA:20   GAUAAUAGUAAUAAAACAUU   1   *||||=|||||||*|||||| targets:2855   AUAUUGUCAUUAUGUUGUAA   2874 Target Full Sequence	2.5	PREDICTED: Glycine max protein indeterminate-domain 2-like (LOC100806404), mRNA	protein indeterminate-domain 2-like(LOC100806404)	coding protein	psRNATarget