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BaseInfo

ncRNA ID novel_gma_miR3472
Species Glycine max
Class miRNA
Genome position Chr18:39304589-39304673 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 66 - ACUUGUAAUGGAUGAAGCAG - 85
Stem-loop(if miRNA) --       --    A  AA     U A      UU       UC
  ACUUGUA  AUGG UG  GCAGC G GUGUGC  GGUUCUG  A
  |||||||  |||| ||  ||||| | ||||||  |||||||  G
  UGGACAU  UACC AC  UGUUG C CGUAUG  CUAAGGU  G
UA       GU    -  --     U C      -U       UG
Stem-loop sequence ACUUGUAAUGGAUGAAGCAGCUGAGUGUGCUUGGUUCUGUCAGGGUUGGAAUCUGUAUGCCCUGUUGUCACCAUUGUACAGGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB331960.1
ncRNA:20   GACGAAGUAGGUAAUGUUCA   1
  =||||||||=||||||||||
targets:578   UUGCUUCAUUCAUUACAAGU   597

1.5 Glycine max mRNA for peroxisomal short-chain dehydrogenase/reductase family protein, complete cds NA coding protein psRNATarget
NM_001251416.1
ncRNA:20   GACGAAGUAGGUAAUGUUCA   1
  =||||||||=||||||||||
targets:578   UUGCUUCAUUCAUUACAAGU   597

1.5 Glycine max peroxisomal short-chain dehydrogenase/reductase family protein (LOC100170726), mRNA peroxisomal short-chain dehydrogenase/reductase family protein(LOC100170726) coding protein psRNATarget
BT092443.1
ncRNA:20   GACGAAGUAGGUAAUGUUCA   1
  =||||||||=||||||||||
targets:637   UUGCUUCAUUCAUUACAAGU   656

1.5 Soybean clone JCVI-FLGm-10P8 unknown mRNA NA coding protein psRNATarget
AK245874.1
ncRNA:20   GACGAAGUAGGUAAUGUUCA   1
  =||||||||=||||||||||
targets:616   UUGCUUCAUUCAUUACAAGU   635

1.5 Glycine max cDNA, clone: GMFL01-44-B18 NA coding protein psRNATarget
XM_014767575.1
ncRNA:20   GACGAAGUAGGUAAUGUUCA   1
  **|*||=|||||||||||||
targets:2092   AGGAUUUAUCCAUUACAAGU   2111

3.0 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At5g43820 (LOC100806557), mRNA putative pentatricopeptide repeat-containing protein At5g43820(LOC100806557) coding protein psRNATarget
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