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BaseInfo

ncRNA ID novel_gma_miR3464
Species Glycine max
Class miRNA
Genome position Chr17:15970042-15970109 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - UAGACGGUCUUGUUUGAACC - 20
Stem-loop(if miRNA) -----------UAGA   U      UG  CCG      C
               CGG CUUGUU  AA   AGAUGA U
               ||| ||||||  ||   |||||| U
               GUU GAACAG  UU   UUUAUU U
GAAGAUGUAGUAUAA   U      GU  --A      A
Stem-loop sequence UAGACGGUCUUGUUUGAACCGAGAUGACUUUAUUAUUUAUUUGGACAAGUUUGAAUAUGAUGUAGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003548070.3
ncRNA:20   CCAAGUUUGUUCUGGCAGAU   1
  *||||||||||||||*|||*
targets:271   UGUUCAAACAAGACCCUCUC   290

2.5 PREDICTED: Glycine max surfeit locus protein 2 (LOC100806918), mRNA surfeit locus protein 2(LOC100806918) coding protein psRNATarget
XM_006592765.2
ncRNA:20   CCAAGUUUGUUCUGGCAGAU   1
  **|||||||||*||||||||
targets:942   UUUUCAAACAAAACCGUCUA   961

2.5 PREDICTED: Glycine max G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (LOC100807714), transcript variant X1, mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230(LOC100807714) coding protein psRNATarget