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BaseInfo

ncRNA ID novel_gma_miR3463
Species Glycine max
Class miRNA
Genome position Chr17:10834247-10834352 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - UAUUUUAUUUCUUAUUUUGG - 20
Stem-loop(if miRNA) -------      A   C   U       U         ---------   UUUACCAAA
       UAUUUU UUU UUA UUUGGUU CAAUUGGUC         CUA         A
       |||||| ||| ||| ||||||| |||||||||         |||         U
       AUAGAA AAA AAU AAACCAG GUUAAUCAG         CCA         G
CCAGGAA      A   A   U       -         UUAAUACUA   AAAAUGGCG
Stem-loop sequence UAUUUUAUUUCUUAUUUUGGUUUCAAUUGGUCCUAUUUACCAAAAUGGCGGUAAAAACCAUCAUAAUUGACUAAUUGGACCAAAUUAAAAAAAAAGAUAAAGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600825.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **||||||||||||||||||
targets:222   AGAAAAUAAGAAAUAAAAUA   241

1.0 PREDICTED: Glycine max probable methyltransferase PMT14 (LOC100527886), transcript variant X1, mRNA probable methyltransferase PMT14(LOC100527886) coding protein psRNATarget
XM_006600826.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **||||||||||||||||||
targets:223   AGAAAAUAAGAAAUAAAAUA   242

1.0 PREDICTED: Glycine max probable methyltransferase PMT14 (LOC100527886), transcript variant X2, mRNA probable methyltransferase PMT14(LOC100527886) coding protein psRNATarget
XM_003526572.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *||||||||||=||||||||
targets:119   ACAAAAUAAGAGAUAAAAUA   138

1.5 PREDICTED: Glycine max probable N-succinyldiaminopimelate aminotransferase DapC (LOC100818968), mRNA probable N-succinyldiaminopimelate aminotransferase DapC(LOC100818968) coding protein psRNATarget
XM_003550013.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =|||=|*|||||||||||||
targets:1490   UCAAGACAAGAAAUAAAAUA   1509

2.0 PREDICTED: Glycine max uncharacterized LOC100798077 (LOC100798077), mRNA uncharacterized LOC100798077(LOC100798077) coding protein psRNATarget
XM_014776702.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |*||||*|||||||||||||
targets:1653   CAAAAAGAAGAAAUAAAAUA   1672

2.0 PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like (LOC100797170), transcript variant X1, mRNA phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like(LOC100797170) coding protein psRNATarget
XM_014776707.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |*||||*|||||||||||||
targets:1689   CAAAAAGAAGAAAUAAAAUA   1708

2.0 PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like (LOC100797170), transcript variant X4, mRNA phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like(LOC100797170) coding protein psRNATarget
XM_014776704.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |*||||*|||||||||||||
targets:1793   CAAAAAGAAGAAAUAAAAUA   1812

2.0 PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like (LOC100797170), transcript variant X2, mRNA phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like(LOC100797170) coding protein psRNATarget
XM_003538682.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |*||||*|||||||||||||
targets:1861   CAAAAAGAAGAAAUAAAAUA   1880

2.0 PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like (LOC100807344), transcript variant X2, mRNA phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like(LOC100807344) coding protein psRNATarget
XM_006590501.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |*||||*|||||||||||||
targets:1866   CAAAAAGAAGAAAUAAAAUA   1885

2.0 PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like (LOC100807344), transcript variant X1, mRNA phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like(LOC100807344) coding protein psRNATarget
XM_003548385.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =*||||*|||||||||||||
targets:263   UGAAAAAAAGAAAUAAAAUA   282

2.0 PREDICTED: Glycine max uncharacterized protein At5g41620-like (LOC100805864), mRNA uncharacterized protein At5g41620-like(LOC100805864) coding protein psRNATarget
XM_014770147.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **||||*|||||||||||||
targets:28   AAAAAAAAAGAAAUAAAAUA   47

2.0 PREDICTED: Glycine max putative inactive cadmium/zinc-transporting ATPase HMA3 (LOC100775934), transcript variant X6, mRNA putative inactive cadmium/zinc-transporting ATPase HMA3(LOC100775934) coding protein psRNATarget
XM_014770146.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **||||*|||||||||||||
targets:28   AAAAAAAAAGAAAUAAAAUA   47

2.0 PREDICTED: Glycine max putative inactive cadmium/zinc-transporting ATPase HMA3 (LOC100775934), transcript variant X5, mRNA putative inactive cadmium/zinc-transporting ATPase HMA3(LOC100775934) coding protein psRNATarget
XM_014770144.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **||||*|||||||||||||
targets:28   AAAAAAAAAGAAAUAAAAUA   47

2.0 PREDICTED: Glycine max putative inactive cadmium/zinc-transporting ATPase HMA3 (LOC100775934), transcript variant X1, mRNA putative inactive cadmium/zinc-transporting ATPase HMA3(LOC100775934) coding protein psRNATarget
XM_006585771.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  ||||||*|||||||||=|||
targets:259   CCAAAAAAAGAAAUAAGAUA   278

2.5 PREDICTED: Glycine max uncharacterized LOC100804073 (LOC100804073), transcript variant X2, mRNA uncharacterized LOC100804073(LOC100804073) coding protein psRNATarget
XM_003531863.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  ||||||*|||||||||=|||
targets:241   CCAAAAAAAGAAAUAAGAUA   260

2.5 PREDICTED: Glycine max uncharacterized LOC100804073 (LOC100804073), transcript variant X1, mRNA uncharacterized LOC100804073(LOC100804073) coding protein psRNATarget
XM_006585772.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  ||||||*|||||||||=|||
targets:252   CCAAAAAAAGAAAUAAGAUA   271

2.5 PREDICTED: Glycine max uncharacterized LOC100804073 (LOC100804073), transcript variant X3, mRNA uncharacterized LOC100804073(LOC100804073) coding protein psRNATarget
XM_006573544.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *|||||||||=||||||||*
targets:2010   ACAAAAUAAGGAAUAAAAUU   2029

2.5 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X2, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_006573545.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *|||||||||=||||||||*
targets:2055   ACAAAAUAAGGAAUAAAAUU   2074

2.5 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X1, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_006573546.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *|||||||||=||||||||*
targets:2153   ACAAAAUAAGGAAUAAAAUU   2172

2.5 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X3, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_014776034.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *|||||||||=||||||||*
targets:2191   ACAAAAUAAGGAAUAAAAUU   2210

2.5 PREDICTED: Glycine max protein DA1-related 1-like (LOC100817969), transcript variant X4, mRNA protein DA1-related 1-like(LOC100817969) coding protein psRNATarget
XM_006601200.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |||||||||*|||||||||*
targets:1776   CCAAAAUAAAAAAUAAAAUU   1795

2.5 PREDICTED: Glycine max interferon-related developmental regulator 1-like (LOC100796478), transcript variant X2, mRNA interferon-related developmental regulator 1-like(LOC100796478) coding protein psRNATarget
XM_003550258.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  |||||||||*|||||||||*
targets:1878   CCAAAAUAAAAAAUAAAAUU   1897

2.5 PREDICTED: Glycine max interferon-related developmental regulator 1-like (LOC100796478), transcript variant X1, mRNA interferon-related developmental regulator 1-like(LOC100796478) coding protein psRNATarget
XM_006576895.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *||=|||||||||*||||||
targets:2614   ACAGAAUAAGAAAGAAAAUA   2633

2.5 PREDICTED: Glycine max histone-lysine N-methyltransferase SUVR2-like (LOC100788602), transcript variant X2, mRNA histone-lysine N-methyltransferase SUVR2-like(LOC100788602) coding protein psRNATarget
XM_006576894.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *||=|||||||||*||||||
targets:2641   ACAGAAUAAGAAAGAAAAUA   2660

2.5 PREDICTED: Glycine max histone-lysine N-methyltransferase SUVR2-like (LOC100788602), transcript variant X1, mRNA histone-lysine N-methyltransferase SUVR2-like(LOC100788602) coding protein psRNATarget
AK287056.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *||||=|||*||||||||||
targets:3074   GCAAAGUAAUAAAUAAAAUA   3093

2.5 Glycine max cDNA, clone: GMFL01-43-B02 NA coding protein psRNATarget
XM_003546311.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  *||||=|||*||||||||||
targets:3156   GCAAAGUAAUAAAUAAAAUA   3175

2.5 PREDICTED: Glycine max kinesin-13A (LOC100819897), mRNA kinesin-13A(LOC100819897) coding protein psRNATarget
EF210140.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =*|||||||||||*||||||
targets:868   UGAAAAUAAGAAACAAAAUA   887

2.5 Glycine max ethylene receptor (EIN4) mRNA, complete cds NA coding protein psRNATarget
XM_006602045.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =*|||||||||||*||||||
targets:666   UGAAAAUAAGAAACAAAAUA   685

2.5 PREDICTED: Glycine max protein EIN4-like (LOC100796518), mRNA protein EIN4-like(LOC100796518) coding protein psRNATarget
NM_001248078.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =*|||||||||||*||||||
targets:2442   UGAAAAUAAGAAACAAAAUA   2461

2.5 Glycine max GAF/HisKA/CheY-like REC domain-containing protein (EIN4), mRNA ethylene receptor(EIN4) coding protein psRNATarget
XM_003555519.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  =*|||||||||||*||||||
targets:2890   UGAAAAUAAGAAACAAAAUA   2909

2.5 PREDICTED: Glycine max protein EIN4-like (LOC100811462), mRNA protein EIN4-like(LOC100811462) coding protein psRNATarget
XM_003546496.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **|||||||*||||||||||
targets:118   AAAAAAUAAAAAAUAAAAUA   137

2.5 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X3, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_014768122.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **|||||||*||||||||||
targets:119   AAAAAAUAAAAAAUAAAAUA   138

2.5 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X4, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_006597852.2
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **|||||||*||||||||||
targets:118   AAAAAAUAAAAAAUAAAAUA   137

2.5 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X1, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_014768121.1
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **|||||||*||||||||||
targets:118   AAAAAAUAAAAAAUAAAAUA   137

2.5 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X2, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_014774678.1
ncRNA:20   GGUUUUAUUCUUU-AUUUUAU   1
  *||||||||||||-|||||||
targets:65   GCAAAAUAAGAAAAUAAAAUA   85

3.0 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X3, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_003551999.3
ncRNA:20   GGUUUUAUUCUUU-AUUUUAU   1
  *||||||||||||-|||||||
targets:59   GCAAAAUAAGAAAAUAAAAUA   79

3.0 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X2, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_014774677.1
ncRNA:20   GGUUUUAUUCUUU-AUUUUAU   1
  *||||||||||||-|||||||
targets:70   GCAAAAUAAGAAAAUAAAAUA   90

3.0 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X1, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_003519148.3
ncRNA:20   GGUUUUAUUCUUUAUUUUAU   1
  **=||||||||||||||||*
targets:78   AAGAAAUAAGAAAUAAAAUC   97

3.0 PREDICTED: Glycine max glucose-6-phosphate isomerase 1, chloroplastic (LOC100809452), mRNA glucose-6-phosphate isomerase 1, chloroplastic(LOC100809452) coding protein psRNATarget
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