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BaseInfo

ncRNA ID novel_gma_miR3461
Species Glycine max
Class miRNA
Genome position Chr1:37735652-37735735 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 65 - CGAGUUGAAACUCUAAUUCU - 84
Stem-loop(if miRNA) --           -     U         UG -   AAAG UU
  AAUUGGAGUUU GACUC GAUAAUCUG  U AAC    G  U
  ||||||||||| ||||| |||||||||  | |||    |  G
  UUAAUCUCAAA UUGAG CUAUUGGAU  A UUG    U  U
UC           G     -         GU A   GAAA UG
Stem-loop sequence AAUUGGAGUUUGACUCUGAUAAUCUGUGUAACAAAGGUUUGUGUUAAAGGUUAAUGUAGGUUAUCGAGUUGAAACUCUAAUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU019563.1
ncRNA:20   UCUUAAUCUCAAAGUUGAGC   1
  |||=|||||||||||*||||
targets:1000   AGAGUUAGAGUUUCACCUCG   1019

2.5 Glycine max transcription factor (WRKY19) mRNA, partial cds NA coding protein psRNATarget
AK245549.1
ncRNA:20   UCUUAAUCUCAAAGUUGAGC   1
  |||=|||||||||||*||||
targets:1866   AGAGUUAGAGUUUCACCUCG   1885

2.5 Glycine max cDNA, clone: GMFL01-33-N21 NA coding protein psRNATarget
XM_003538275.3
ncRNA:20   UCUUAAUCUCAAAGUUGAGC   1
  |||=|||||||||||*||||
targets:2023   AGAGUUAGAGUUUCACCUCG   2042

2.5 PREDICTED: Glycine max probable WRKY transcription factor 25 (LOC100127421), mRNA probable WRKY transcription factor 25(LOC100127421) coding protein psRNATarget
XM_006587042.2
ncRNA:20   UCUUAAUCUCAAAGUUGAGC   1
  |||=|||||||||||*||||
targets:2930   AGAGUUAGAGUUUCAUCUCG   2949

2.5 PREDICTED: Glycine max subtilisin-like protease SBT2.5 (LOC100820468), mRNA subtilisin-like protease SBT2.5(LOC100820468) coding protein psRNATarget