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BaseInfo

ncRNA ID	novel_gma_miR3454
Species	Glycine max
Class	miRNA
Genome position	Chr17:35298187-35298311 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	21
Mature sequence(if miRNA)	1 - AUUUUACAUCGGUUAUUAGGA - 21
Stem-loop(if miRNA)	--       A                                CC            UAUU   CU   AUUUUAC UCGGUUAUUAGGACAACCGAUGUAGAAGUCUG  CAUUCUAAGACG    GGU  U   ||||||| ||||||||||||||||||||||||||||||||  ||||||||||||    |||   UAAGAUG AGCCAAUAAUCCUGUUGGCUACAUCUUUAGAC  GUAAGAUUCUGC    CCA  U GG       C                                -U            ----   AA
Stem-loop sequence	AUUUUACAUCGGUUAUUAGGACAACCGAUGUAGAAGUCUGCCCAUUCUAAGACGUAUUGGUCUUUAAACCCGUCUUAGAAUGUCAGAUUUCUACAUCGGUUGUCCUAAUAACCGACGUAGAAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014767461.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   |||||||||||||||||=||| targets:2223   UCCUAAUAACCGAUGUAGAAU   2243 Target Full Sequence	1.5	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_014767461.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   |||||||||||||||||=||| targets:2267   UCCUAAUAACCGAUGUAGAAU   2287 Target Full Sequence	1.5	PREDICTED: Glycine max putative dual specificity protein phosphatase DSP8 (LOC100787468), transcript variant X1, mRNA	putative dual specificity protein phosphatase DSP8(LOC100787468)	coding protein	psRNATarget
XM_006598094.2	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *||*|||||||||||||=||| targets:1159   CCCCAAUAACCGAUGUAGAAU   1179 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X20, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768221.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *||*|||||||||||||=||| targets:1272   CCCCAAUAACCGAUGUAGAAU   1292 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X21, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768217.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *||*|||||||||||||=||| targets:1432   CCCCAAUAACCGAUGUAGAAU   1452 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X9, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768216.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *||*|||||||||||||=||| targets:1709   CCCCAAUAACCGAUGUAGAAU   1729 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X8, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014768212.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *||*|||||||||||||=||| targets:1872   CCCCAAUAACCGAUGUAGAAU   1892 Target Full Sequence	2.5	PREDICTED: Glycine max nuclear pore complex protein GP210-like (LOC100812621), transcript variant X1, mRNA	nuclear pore complex protein GP210-like(LOC100812621)	coding protein	psRNATarget
XM_014764114.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *=|*|||||||||||||*||| targets:2206   AUCAAAUAACCGAUGUACAAU   2226 Target Full Sequence	2.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764113.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *=|*|||||||||||||*||| targets:2214   AUCAAAUAACCGAUGUACAAU   2234 Target Full Sequence	2.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_006591004.2	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *=|*|||||||||||||*||| targets:2270   AUCAAAUAACCGAUGUACAAU   2290 Target Full Sequence	2.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget
XM_014764112.1	ncRNA:21   AGGAUUAUUGGCUACAUUUUA   1   *=|*|||||||||||||*||| targets:2286   AUCAAAUAACCGAUGUACAAU   2306 Target Full Sequence	2.5	PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA	somatic embryogenesis receptor kinase 1-like(LOC100777573)	coding protein	psRNATarget