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BaseInfo

ncRNA ID novel_gma_miR3444
Species Glycine max
Class miRNA
Genome position Chr16:18645541-18645669 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - GGGGUACGAAGUUUUUUAUC - 20
Stem-loop(if miRNA) --A                                     A     A      A  CUGCGUACA
   AAAAAACUUCGUACCCCAUUGCCCAGAGGCUCUUUGC UAUGC AGGGUA GG         A
   ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
   UUUUUUGAAGCAUGGGGUAACGGGUCUCCGAGAAGCG AUACG UUCCAU CC         C
CUA                                     -     C      A  CCCUCCCUA
Stem-loop sequence AAAAAAACUUCGUACCCCAUUGCCCAGAGGCUCUUUGCAUAUGCAAGGGUAAGGCUGCGUACAACAUCCCUCCCCCAUACCUUCGCAUAGCGAAGAGCCUCUGGGCAAUGGGGUACGAAGUUUUUUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001255502.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  |||||||||||||||||||=
targets:1237   GAUAAAAAACUUCGUACCCU   1256

1.0 Glycine max DNA repair protein rhp7-like (LOC100797833), mRNA DNA repair protein rhp7-like(LOC100797833) coding protein psRNATarget
BT094615.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  |||||||||||||||||||=
targets:1237   GAUAAAAAACUUCGUACCCU   1256

1.0 Soybean clone JCVI-FLGm-18N8 unknown mRNA NA coding protein psRNATarget
XM_006597603.2
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  **||||||||||||||||||
targets:2119   CUUAAAAAACUUCGUACCCC   2138

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g51965, mitochondrial (LOC100795211), mRNA pentatricopeptide repeat-containing protein At1g51965, mitochondrial(LOC100795211) coding protein psRNATarget
AK245921.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  *|*|||||||||||||||||
targets:606   AAAAAAAAACUUCGUACCCC   625

1.0 Glycine max cDNA, clone: GMFL01-46-C24 NA coding protein psRNATarget
XM_006606250.2
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  *|*|||||||||||||||||
targets:5042   AAAAAAAAACUUCGUACCCC   5061

1.0 PREDICTED: Glycine max disease resistance protein RPM1-like (LOC102661742), mRNA disease resistance protein RPM1-like(LOC102661742) coding protein psRNATarget
AK245921.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  ***|||||||||||||||||
targets:777   CUCAAAAAACUUCGUACCCC   796

2.0 Glycine max cDNA, clone: GMFL01-46-C24 NA coding protein psRNATarget
XM_014776198.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  |**|||||||||||||||||
targets:1739   GUAAAAAAACUUCGUACCCC   1758

2.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X2, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
XM_006581288.2
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  |**|||||||||||||||||
targets:2117   GUAAAAAAACUUCGUACCCC   2136

2.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase KEG-like (LOC100789574), transcript variant X1, mRNA E3 ubiquitin-protein ligase KEG-like(LOC100789574) coding protein psRNATarget
BT098758.1
ncRNA:20   CUAUUUUUUGAAGCAUGGGG   1
  **|||*||||||||||||||
targets:86   UUUAAUAAACUUCGUACCCC   105

2.0 Soybean clone JCVI-FLGm-16B6 unknown mRNA NA coding protein psRNATarget
XM_003544873.3
ncRNA:20   CUAUUUUUU-GAAGCAUGGGG   1
  *||||||||-|||||||||||
targets:510   AAUAAAAAAACUUCGUACCCC   530

3.0 PREDICTED: Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100811869), mRNA biogenesis of lysosome-related organelles complex 1 subunit 1-like(LOC100811869) coding protein psRNATarget
BT093819.1
ncRNA:20   CUAUUUUUU-GAAGCAUGGGG   1
  *||||||||-|||||||||||
targets:186   UAUAAAAAAACUUCGUACCCC   206

3.0 Soybean clone JCVI-FLGm-17F20 unknown mRNA NA coding protein psRNATarget
XM_006578815.2
ncRNA:20   CUAUU-UUUUGAAGCAUGGGG   1
  *=|||-|||||||||||||||
targets:1505   AGUAAUAAAACUUCGUACCCC   1525

3.0 PREDICTED: Glycine max GTPase-activating protein GYP7-like (LOC100793557), transcript variant X2, mRNA GTPase-activating protein GYP7-like(LOC100793557) coding protein psRNATarget
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