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BaseInfo

ncRNA ID novel_gma_miR3440
Species Glycine max
Class miRNA
Genome position Chr15:19622347-19622396 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - CUCUAGUUCAGUUAUAAAUC - 20
Stem-loop(if miRNA) --   UAGU   -       AUCUC
  CUC    UCA GUUAUAA     U
  |||    ||| |||||||     U
  GGG    AGU CAAUGUU     G
CA   UUUU   A       CAUAC
Stem-loop sequence CUCUAGUUCAGUUAUAAAUCUCUUGCAUACUUGUAACAUGAUUUUGGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006584940.2
ncRNA:20   CUAAAUAUUGACUUGAUCUC   1
  *|*|||||||||||=|||||
targets:1631   CAGUUAUAACUGAAUUAGAG   1650

2.5 PREDICTED: Glycine max histidinol dehydrogenase, chloroplastic-like (LOC100802665), transcript variant X2, mRNA histidinol dehydrogenase, chloroplastic-like(LOC100802665) coding protein psRNATarget