Search result

BaseInfo

ncRNA ID novel_gma_miR3434
Species Glycine max
Class miRNA
Genome position Chr15:3225374-3225455 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - ACCAUGAGGACAAAGAACAA - 20
Stem-loop(if miRNA) --      A       ---A  UACUUUAAAUAUCACUUUAG
  GUUUUU GUCUUUA    AA                    A
  |||||| |||||||    ||                    U
  CAAGAA CAGGAGU    UG                    A
AA      A       ACCA  AAAUCUAUUAUAAAAAAGUG
Stem-loop sequence GUUUUUAGUCUUUAAAAUACUUUAAAUAUCACUUUAGAUAGUGAAAAAAUAUUAUCUAAAGUACCAUGAGGACAAAGAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768123.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1376   UUGUUUCUUGUCCUCAUGGU   1395

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X5, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_014768124.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1617   UUGUUUCUUGUCCUCAUGGU   1636

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X6, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_003546496.3
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1747   UUGUUUCUUGUCCUCAUGGU   1766

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X3, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_014768122.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1853   UUGUUUCUUGUCCUCAUGGU   1872

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X4, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_006597852.2
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1873   UUGUUUCUUGUCCUCAUGGU   1892

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X1, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_006587020.2
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1587   UUGUUUCUUGUCCUCAUGGU   1606

2.0 PREDICTED: Glycine max uncharacterized LOC100814604 (LOC100814604), transcript variant X2, mRNA uncharacterized LOC100814604(LOC100814604) coding protein psRNATarget
XM_014768121.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:2047   UUGUUUCUUGUCCUCAUGGU   2066

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X2, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_006597851.2
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1772   UUGUUUCUUGUCCUCAUGGU   1791

2.0 PREDICTED: Glycine max uncharacterized LOC100784818 (LOC100784818), transcript variant X7, mRNA uncharacterized LOC100784818(LOC100784818) coding protein psRNATarget
XM_003533768.3
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:1698   UUGUUUCUUGUCCUCAUGGU   1717

2.0 PREDICTED: Glycine max uncharacterized LOC100814604 (LOC100814604), transcript variant X1, mRNA uncharacterized LOC100814604(LOC100814604) coding protein psRNATarget
XM_006587021.2
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  |||||=*|||||||||||||
targets:2495   UUGUUUCUUGUCCUCAUGGU   2514

2.0 PREDICTED: Glycine max uncharacterized LOC100814604 (LOC100814604), transcript variant X3, mRNA uncharacterized LOC100814604(LOC100814604) coding protein psRNATarget
XM_003547608.3
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  ||||||*||*||||||||||
targets:700   UUGUUCGUUCUCCUCAUGGU   719

2.5 PREDICTED: Glycine max anthranilate synthase beta subunit 2, chloroplastic-like (LOC100781618), mRNA anthranilate synthase beta subunit 2, chloroplastic-like(LOC100781618) coding protein psRNATarget
AK286504.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  **|||||||||||||*||||
targets:181   AAGUUCUUUGUCCUCUUGGU   200

2.5 Glycine max cDNA, clone: GMFL01-30-A20 NA coding protein psRNATarget
XM_003518839.3
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  **|||||||||||||*||||
targets:1073   AAGUUCUUUGUCCUCUUGGU   1092

2.5 PREDICTED: Glycine max histone H1-like (LOC100775944), mRNA histone H1-like(LOC100775944) coding protein psRNATarget
AK287277.1
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  **|||||||||||||*||||
targets:1049   AAGUUCUUUGUCCUCUUGGU   1068

2.5 Glycine max cDNA, clone: GMFL01-48-K10 NA coding protein psRNATarget
XM_003536842.3
ncRNA:20   AACAAGAAACAGGAGUACCA   1
  **|||||||||||||*||||
targets:1064   AAGUUCUUUGUCCUCUUGGU   1083

2.5 PREDICTED: Glycine max histone H1-like (LOC100795994), mRNA histone H1-like(LOC100795994) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.