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BaseInfo

ncRNA ID novel_gma_miR3422
Species Glycine max
Class miRNA
Genome position Chr14:29600871-29601005 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - AAGAUGGAAAAAAAAAAAAA - 20
Stem-loop(if miRNA) AAGAU      --AA       A   A   -UG      -  G    G   U      -------- UU   UUU
     GGAAAA    AAAAAAA CCA UCA   UUAGGG UU AAGA GAU ACAGUG        C  UAC   G
     ||||||    ||||||| ||| |||   |||||| || |||| ||| ||||||        |  |||   U
     UCUUUU    UUUUUUU GGU AGU   AGUCCU AA UUUU UUA UGUCAC        G  AUG   G
-----      ACUA       A   -   UCA      G  G    A   U      UAUUUUUU UU   UUU
Stem-loop sequence AAGAUGGAAAAAAAAAAAAAACCAAUCAUGUUAGGGUUGAAGAGGAUUACAGUGCUUUACUUUGUGUUUGUAUUGUUUUUUAUCACUGUUAUUAUUUUGAAGUCCUGAACUUGAUGGAUUUUUUUAUCAUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098652.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  *|||||||||||||||||||
targets:408   CUUUUUUUUUUUUCCAUCUU   427

0.0 Soybean clone JCVI-FLGm-16P1 unknown mRNA NA coding protein psRNATarget
NM_001253173.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||=|||||
targets:672   UUUUUUUUUUUUUCUAUCUU   691

1.5 Glycine max uncharacterized LOC100786519 (LOC100786519), mRNA uncharacterized LOC100786519(LOC100786519) coding protein psRNATarget
BT098427.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||=||||||
targets:14   UUUUUUUUUUUUUUCAUCUU   33

1.5 Soybean clone JCVI-FLGm-16J5 unknown mRNA NA coding protein psRNATarget
XM_003545662.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||*|||||
targets:199   UUUUUUUUUUUUUCAAUCUU   218

1.5 PREDICTED: Glycine max uncharacterized LOC100816522 (LOC100816522), transcript variant X1, mRNA uncharacterized LOC100816522(LOC100816522) coding protein psRNATarget
XM_006597929.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||*|||||
targets:199   UUUUUUUUUUUUUCAAUCUU   218

1.5 PREDICTED: Glycine max uncharacterized LOC100816522 (LOC100816522), transcript variant X2, mRNA uncharacterized LOC100816522(LOC100816522) coding protein psRNATarget
XM_006599619.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||*||||
targets:492   UUUUUUUUUUUUUCCUUCUU   511

1.5 PREDICTED: Glycine max uncharacterized LOC102669654 (LOC102669654), transcript variant X2, mRNA uncharacterized LOC102669654(LOC102669654) coding protein psRNATarget
XM_006575652.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||*|||||
targets:42   UUUUUUUUUUUUUCAAUCUU   61

1.5 PREDICTED: Glycine max uncharacterized LOC100820134 (LOC100820134), mRNA uncharacterized LOC100820134(LOC100820134) coding protein psRNATarget
XM_014762146.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||*||
targets:2065   UUUUUUUUUUUUUCCAUAUU   2084

1.5 PREDICTED: Glycine max O-glucosyltransferase rumi homolog (LOC100789969), transcript variant X2, mRNA O-glucosyltransferase rumi homolog(LOC100789969) coding protein psRNATarget
XM_003533140.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||*||
targets:1991   UUUUUUUUUUUUUCCAUAUU   2010

1.5 PREDICTED: Glycine max O-glucosyltransferase rumi homolog (LOC100789969), transcript variant X1, mRNA O-glucosyltransferase rumi homolog(LOC100789969) coding protein psRNATarget
XM_006587252.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||*||
targets:1962   UUUUUUUUUUUUUCCAUAUU   1981

1.5 PREDICTED: Glycine max O-glucosyltransferase rumi homolog (LOC100789969), transcript variant X3, mRNA O-glucosyltransferase rumi homolog(LOC100789969) coding protein psRNATarget
XM_006592634.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  *||||||||||||=||||||
targets:705   GUUUUUUUUUUUUUCAUCUU   724

1.5 PREDICTED: Glycine max cyclin-dependent kinase inhibitor 1C-like (LOC102664993), mRNA cyclin-dependent kinase inhibitor 1C-like(LOC102664993) coding protein psRNATarget
BT098423.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||*|||||
targets:7   UUUUUUUUUUUUUCAAUCUU   26

1.5 Soybean clone JCVI-FLGm-12O24 unknown mRNA NA coding protein psRNATarget
BT098135.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||*|||||
targets:10   UUUUUUUUUUUUUCAAUCUU   29

1.5 Soybean clone JCVI-FLGm-12G11 unknown mRNA NA coding protein psRNATarget
BT099233.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||||||*|
targets:6   UUUUUUUUUUUUUCCAUCAU   25

1.5 Soybean clone JCVI-FLGm-13J11 unknown mRNA NA coding protein psRNATarget
XM_003550578.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:2667   UUUUUUUUUUUUUCCAUUUA   2686

2.5 PREDICTED: Glycine max U-box domain-containing protein 34 (LOC100805896), mRNA U-box domain-containing protein 34(LOC100805896) coding protein psRNATarget
XM_003553296.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||=||||*
targets:2530   UUUUUUUUUUUUUCUAUCUC   2549

2.5 PREDICTED: Glycine max probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (LOC100783837), mRNA probably inactive leucine-rich repeat receptor-like protein kinase At2g25790(LOC100783837) coding protein psRNATarget
XM_006585466.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||=|||||*
targets:58   UUUUUUUUUUUUUUCAUCUC   77

2.5 PREDICTED: Glycine max serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like (LOC100786941), transcript variant X1, mRNA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like(LOC100786941) coding protein psRNATarget
XM_003531581.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||=|||||*
targets:58   UUUUUUUUUUUUUUCAUCUC   77

2.5 PREDICTED: Glycine max serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like (LOC100786941), transcript variant X2, mRNA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like(LOC100786941) coding protein psRNATarget
XM_014773969.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:1455   UUUUUUUUUUUUUCCAUUUC   1474

2.5 PREDICTED: Glycine max protein RADIALIS-like 3 (LOC106798110), mRNA protein RADIALIS-like 3(LOC106798110) coding protein psRNATarget
XM_006574891.2
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:1446   UUUUUUUUUUUUUCCAUUUC   1465

2.5 PREDICTED: Glycine max probable 6-phosphogluconolactonase 2 (LOC100806593), transcript variant X3, mRNA probable 6-phosphogluconolactonase 2(LOC100806593) coding protein psRNATarget
XM_003527420.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||=|||*
targets:1086   UUUUUUUUUUUUUCCGUCUG   1105

2.5 PREDICTED: Glycine max protein THYLAKOID FORMATION1, chloroplastic (LOC100779964), mRNA protein THYLAKOID FORMATION1, chloroplastic(LOC100779964) coding protein psRNATarget
AK244002.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||=|||*
targets:972   UUUUUUUUUUUUUCCGUCUG   991

2.5 Glycine max cDNA, clone: GMFL01-01-N08 NA coding protein psRNATarget
XM_003518729.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:1076   UUUUUUUUUUUUUCCAUUUC   1095

2.5 PREDICTED: Glycine max probable 6-phosphogluconolactonase 2 (LOC100806593), transcript variant X1, mRNA probable 6-phosphogluconolactonase 2(LOC100806593) coding protein psRNATarget
XM_003518730.3
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:1051   UUUUUUUUUUUUUCCAUUUC   1070

2.5 PREDICTED: Glycine max probable 6-phosphogluconolactonase 2 (LOC100806593), transcript variant X2, mRNA probable 6-phosphogluconolactonase 2(LOC100806593) coding protein psRNATarget
BT094622.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||=||||*
targets:6   UUUUUUUUUUUUUCUAUCUC   25

2.5 Soybean clone JCVI-FLGm-18N18 unknown mRNA NA coding protein psRNATarget
BT099145.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||=|||||*
targets:8   UUUUUUUUUUUUUUCAUCUC   27

2.5 Soybean clone JCVI-FLGm-23N13 unknown mRNA NA coding protein psRNATarget
BT095097.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  |||||||||||||||||=|*
targets:8   UUUUUUUUUUUUUCCAUUUA   27

2.5 Soybean clone JCVI-FLGm-6B8 unknown mRNA NA coding protein psRNATarget
XM_014768977.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  *||||||||||||=|||||*
targets:5558   GUUUUUUUUUUUUUCAUCUG   5577

2.5 PREDICTED: Glycine max uncharacterized LOC100788212 (LOC100788212), transcript variant X8, mRNA uncharacterized LOC100788212(LOC100788212) coding protein psRNATarget
XM_014768978.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  *||||||||||||=|||||*
targets:5538   GUUUUUUUUUUUUUCAUCUG   5557

2.5 PREDICTED: Glycine max uncharacterized LOC100788212 (LOC100788212), transcript variant X9, mRNA uncharacterized LOC100788212(LOC100788212) coding protein psRNATarget
BT099021.1
ncRNA:20   AAAAAAAAAAAAAGGUAGAA   1
  ||||||||||||||||||**
targets:4   UUUUUUUUUUUUUCCAUCAA   23

2.5 Soybean clone JCVI-FLGm-26F4 unknown mRNA NA coding protein psRNATarget
XM_003539382.3
ncRNA:20   AAAAAAAAAAAAAGGU-AGAA   1
  ||||||||||||||||-||||
targets:98   UUUUUUUUUUUUUCCAAUCUU   118

3.0 PREDICTED: Glycine max auxin-induced protein 6B-like (LOC100794278), mRNA auxin-induced protein 6B-like(LOC100794278) coding protein psRNATarget
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