Search result

BaseInfo

ncRNA ID	novel_gma_miR3416
Species	Glycine max
Class	miRNA
Genome position	Chr14:47707530-47707629 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674
Length	20
Mature sequence(if miRNA)	1 - AACUUCAAUUUUAAUUAGAA - 20
Stem-loop(if miRNA)	--  U   U    C            C A          AAUCUUU         CU AUU GAAU GGAGUUUCACAU G UGAUUUGUAU       UAAAACG   || ||| |||| |||||||||||| | ||||||||||       ||||||A   GA UAA UUUA CUUCAAAGUGUA U AUUAAAUGUA       AUUUUGA AA  U   U    A            A C          -----CU
Stem-loop sequence	CUUAUUUGAAUCGGAGUUUCACAUCGAUGAUUUGUAUAAUCUUUUAAAACGAAGUUUUAUCAUGUAAAUUACUAAUGUGAAACUUCAAUUUUAAUUAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003520274.3	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   |||*|||||||||||||||| targets:1934   UUCCAAUUAAAAUUGAAGUU   1953 Target Full Sequence	1.0	PREDICTED: Glycine max ABSCISIC ACID-INSENSITIVE 5-like protein 2 (LOC100819965), mRNA	ABSCISIC ACID-INSENSITIVE 5-like protein 2(LOC100819965)	coding protein	psRNATarget
XM_006588793.2	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   ||||||||||||*||||||| targets:252   UUCUAAUUAAAAAUGAAGUU   271 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor OFP13-like (LOC100806620), mRNA	transcription repressor OFP13-like(LOC100806620)	coding protein	psRNATarget
XM_003518154.3	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   ||||||||||||*||||||| targets:240   UUCUAAUUAAAAAUGAAGUU   259 Target Full Sequence	1.5	PREDICTED: Glycine max transcription repressor OFP15-like (LOC100816044), mRNA	transcription repressor OFP15-like(LOC100816044)	coding protein	psRNATarget
AK285528.1	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   |||||||*|||||||||||| targets:1928   UUCUAAUCAAAAUUGAAGUU   1947 Target Full Sequence	1.5	Glycine max cDNA, clone: GMFL01-10-P20	NA	coding protein	psRNATarget
XM_003524477.3	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   |||||||*|||||||||||| targets:1938   UUCUAAUCAAAAUUGAAGUU   1957 Target Full Sequence	1.5	PREDICTED: Glycine max 3-ketoacyl-CoA synthase 11-like (LOC100817884), mRNA	3-ketoacyl-CoA synthase 11-like(LOC100817884)	coding protein	psRNATarget
XM_003551091.2	ncRNA:20   AAGAUUAAUUUUAACUUCAA   1   ||=||||||||||||=|||| targets:1214   UUUUAAUUAAAAUUGGAGUU   1233 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor TINY-like (LOC100816404), mRNA	ethylene-responsive transcription factor TINY-like(LOC100816404)	coding protein	psRNATarget
XM_003554034.3	ncRNA:20   AAGA--UUAAUUUUAACUUCAA   1   ||||--|||||||||||||||| targets:2015   UUCUCCAAUUAAAAUUGAAGUU   2036 Target Full Sequence	2.5	PREDICTED: Glycine max ABSCISIC ACID-INSENSITIVE 5-like protein 2 (LOC100783666), mRNA	ABSCISIC ACID-INSENSITIVE 5-like protein 2(LOC100783666)	coding protein	psRNATarget
AK245707.1	ncRNA:20   AAGA-UUAAUUUUAACUUCAA   1   ||=|-|||||||||||||||| targets:935   UUUUCAAUUAAAAUUGAAGUU   955 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-38-N13	NA	coding protein	psRNATarget