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BaseInfo

ncRNA ID novel_gma_miR3411
Species Glycine max
Class miRNA
Genome position Chr13:37203126-37203194 [-]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - AUUAAAUGAUUGUGUAAAAU - 20
Stem-loop(if miRNA) --       U     CCU  U         C  U
  UUUAUAC AUCAU   AU AUAAAUUGU AU A
  ||||||| |||||   || ||||||||| || U
  AAAUGUG UAGUA   UA UAUUUAAUA UA U
UA       U     AAU  U         C  A
Stem-loop sequence UUUAUACUAUCAUCCUAUUAUAAAUUGUCAUUAUUAAUCAUAAUUUAUUAUUAAAUGAUUGUGUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003549115.3
ncRNA:20   UAAAAUGUGUUAGUAAAUUA   1
  ||||||=|||||=|||||||
targets:120   AUUUUAUACAAUUAUUUAAU   139

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like (LOC100812822), mRNA pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like(LOC100812822) coding protein psRNATarget
XM_006577608.2
ncRNA:20   UAAAAUGUGUUAGUAAAUUA   1
  *|||||=||||*||||||||
targets:2091   UUUUUAUACAAACAUUUAAU   2110

2.5 PREDICTED: Glycine max disease resistance protein RGA2-like (LOC102669771), mRNA disease resistance protein RGA2-like(LOC102669771) coding protein psRNATarget
XM_014771718.1
ncRNA:20   UAAAAUGUGUUAGUAAAUUA   1
  =*||||||||||||||*|||
targets:1051   GCUUUACACAAUCAUUGAAU   1070

2.5 PREDICTED: Glycine max RING-H2 finger protein ATL48-like (LOC102660713), mRNA RING-H2 finger protein ATL48-like(LOC102660713) coding protein psRNATarget