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BaseInfo

ncRNA ID novel_gma_miR3407
Species Glycine max
Class miRNA
Genome position Chr13:7216882-7216921 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 1 - UAUACUUAUGAACAAAUUUA - 20
Stem-loop(if miRNA) --     U     A    UU
  UAUAC UAUGA CAAA  U
  ||||| ||||| ||||  A
  GUAUG GUAUU GUUU  A
CA     U     -    UU
Stem-loop sequence UAUACUUAUGAACAAAUUUAAUUUUUGUUAUGUGUAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518582.3
ncRNA:20   AUUUAAACAAGUAUUCAUAU   1
  *|||||||||||*||||||*
targets:1522   CAAAUUUGUUCAGAAGUAUU   1541

2.5 PREDICTED: Glycine max putative glutamine amidotransferase-like protein RP404 (LOC100817990), mRNA putative glutamine amidotransferase-like protein RP404(LOC100817990) coding protein psRNATarget
XM_014771394.1
ncRNA:20   AUUUAAACAAGUAUUCAUAU   1
  ***|||*|||||||||||||
targets:1441   AUCAUUAGUUCAUAAGUAUA   1460

3.0 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 3.1-like (LOC100794603), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 3.1-like(LOC100794603) coding protein psRNATarget
XM_003554054.3
ncRNA:20   AUUUAAACAAGUAUUCAUAU   1
  ***|||*|||||||||||||
targets:1657   AUCAUUAGUUCAUAAGUAUA   1676

3.0 PREDICTED: Glycine max protein NRT1/ PTR FAMILY 3.1-like (LOC100794603), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 3.1-like(LOC100794603) coding protein psRNATarget