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BaseInfo

ncRNA ID novel_gma_miR3405
Species Glycine max
Class miRNA
Genome position Chr12:20937943-20937983 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 19
Mature sequence(if miRNA) 1 - ACUUUAGAACUUCACAUUU - 19
Stem-loop(if miRNA) --   U     CU  A    U
  ACU UAGAA  UC CAUU U
  ||| |||||  || |||| G
  UGA AUUUU  AG GUAA C
UA   U     -U  -    C
Stem-loop sequence ACUUUAGAACUUCACAUUUUGCCAAUGGAUUUUUAUAGUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006592709.2
ncRNA:19   UUUACACUUCAAGAUUUCA   1
  ||*||*|||||||||||||
targets:877   AACUGAGAAGUUCUAAAGU   895

2.0 PREDICTED: Glycine max protein YLS9 (LOC100818413), mRNA protein YLS9(LOC100818413) coding protein psRNATarget
XM_006597059.2
ncRNA:19   UUUACACUUCAAGAUUUCA   1
  |||||*|||||||*|||||
targets:1077   AAAUGAGAAGUUCAAAAGU   1095

2.5 PREDICTED: Glycine max uncharacterized LOC100781055 (LOC100781055), transcript variant X1, mRNA uncharacterized LOC100781055(LOC100781055) coding protein psRNATarget
XM_006597060.2
ncRNA:19   UUUACACUUCAAGAUUUCA   1
  |||||*|||||||*|||||
targets:1082   AAAUGAGAAGUUCAAAAGU   1100

2.5 PREDICTED: Glycine max uncharacterized LOC100781055 (LOC100781055), transcript variant X2, mRNA uncharacterized LOC100781055(LOC100781055) coding protein psRNATarget