Search result

BaseInfo

ncRNA ID novel_gma_miR3402
Species Glycine max
Class miRNA
Genome position Chr12:5725275-5725359 [+]
Reference genome Glycine_max_v2.0
Source SRR1451674
Length 20
Mature sequence(if miRNA) 66 - UUGCUUUCAAGUUUCAACAC - 85
Stem-loop(if miRNA) --GA  GG     G          --------         GA   A
    UG  ACUUG AGAGUAAUAU        UGAACUGCG  GUU C
    ||  ||||| ||||||||||        |||||||||  ||| G
    AC  UGAAC UUUCGUUGUG        ACUUGGCGC  UAG A
CACA  UU     -          UACUUGUU         -A   G
Stem-loop sequence GAUGGGACUUGGAGAGUAAUAUUGAACUGCGGAGUUACGAGGAUACGCGGUUCAUUGUUCAUGUGUUGCUUUCAAGUUUCAACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003539710.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  ||||||||||||||||||||
targets:142   GUGUUGAAACUUGAAAGCAA   161

0.0 PREDICTED: Glycine max exocyst complex component EXO70B1-like (LOC100810579), mRNA exocyst complex component EXO70B1-like(LOC100810579) coding protein psRNATarget
BT090181.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||||||||||||||||=||
targets:24   CUGUUGAAACUUGAAAGUAA   43

1.5 Soybean clone JCVI-FLGm-3H18 unknown mRNA NA coding protein psRNATarget
XM_003518492.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||||||||||||||||=||
targets:232   CUGUUGAAACUUGAAAGUAA   251

1.5 PREDICTED: Glycine max uncharacterized LOC100306191 (LOC100306191), mRNA uncharacterized LOC100306191(LOC100306191) coding protein psRNATarget
XM_003545292.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:252   UUGUUGAAACUUGAAACCAA   271

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100799086), transcript variant X2, mRNA tetratricopeptide repeat protein 7A-like(LOC100799086) coding protein psRNATarget
XM_006595931.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:252   UUGUUGAAACUUGAAACCAA   271

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100799086), transcript variant X4, mRNA tetratricopeptide repeat protein 7A-like(LOC100799086) coding protein psRNATarget
XM_006595930.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:252   UUGUUGAAACUUGAAACCAA   271

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100799086), transcript variant X3, mRNA tetratricopeptide repeat protein 7A-like(LOC100799086) coding protein psRNATarget
XM_006601198.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:273   UUGUUGAAACUUGAAACCAA   292

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100795958), transcript variant X4, mRNA tetratricopeptide repeat protein 7A-like(LOC100795958) coding protein psRNATarget
XM_006595929.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:252   UUGUUGAAACUUGAAACCAA   271

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100799086), transcript variant X1, mRNA tetratricopeptide repeat protein 7A-like(LOC100799086) coding protein psRNATarget
XM_006601197.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:270   UUGUUGAAACUUGAAACCAA   289

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100795958), transcript variant X2, mRNA tetratricopeptide repeat protein 7A-like(LOC100795958) coding protein psRNATarget
XM_006601196.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:270   UUGUUGAAACUUGAAACCAA   289

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100795958), transcript variant X3, mRNA tetratricopeptide repeat protein 7A-like(LOC100795958) coding protein psRNATarget
XM_003550257.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*|||
targets:270   UUGUUGAAACUUGAAACCAA   289

1.5 PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100795958), transcript variant X1, mRNA tetratricopeptide repeat protein 7A-like(LOC100795958) coding protein psRNATarget
XM_003552943.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  **|||||||||||||||||*
targets:308   UAGUUGAAACUUGAAAGCAC   327

2.0 PREDICTED: Glycine max coiled-coil domain-containing protein 22 homolog (LOC100806622), transcript variant X1, mRNA coiled-coil domain-containing protein 22 homolog(LOC100806622) coding protein psRNATarget
XM_006602057.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  **|||||||||||||||||*
targets:322   UAGUUGAAACUUGAAAGCAC   341

2.0 PREDICTED: Glycine max coiled-coil domain-containing protein 22 homolog (LOC100806622), transcript variant X2, mRNA coiled-coil domain-containing protein 22 homolog(LOC100806622) coding protein psRNATarget
NM_001253280.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||*|||||||||||||||*
targets:1350   UUGGUGAAACUUGAAAGCAU   1369

2.0 Glycine max phosphatidylserine decarboxylase proenzyme-like (LOC100811372), mRNA phosphatidylserine decarboxylase proenzyme-like(LOC100811372) coding protein psRNATarget
BT097547.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||*|||||||||||||||*
targets:1352   UUGGUGAAACUUGAAAGCAU   1371

2.0 Soybean clone JCVI-FLGm-26C8 unknown mRNA NA coding protein psRNATarget
XM_003518182.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||||*|||||||||||||*
targets:2674   AUGUUCAAACUUGAAAGCAU   2693

2.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC100797186), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC100797186) coding protein psRNATarget
XM_003518182.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||||*|||||||||||||*
targets:2708   AUGUUCAAACUUGAAAGCAU   2727

2.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC100797186), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC100797186) coding protein psRNATarget
XM_003518182.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *||||*|||||||||||||*
targets:2742   AUGUUCAAACUUGAAAGCAU   2761

2.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC100797186), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC100797186) coding protein psRNATarget
XM_003532370.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  ||||||=||||||=||||||
targets:2580   GUGUUGGAACUUGGAAGCAA   2599

2.5 PREDICTED: Glycine max AT-rich interactive domain-containing protein 2-like (LOC100816021), mRNA AT-rich interactive domain-containing protein 2-like(LOC100816021) coding protein psRNATarget
XM_006580504.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||=||||||=||||||
targets:2459   CUGUUGGAACUUGGAAGCAA   2478

2.5 PREDICTED: Glycine max AT-rich interactive domain-containing protein 2-like (LOC100819320), transcript variant X2, mRNA AT-rich interactive domain-containing protein 2-like(LOC100819320) coding protein psRNATarget
XM_003524404.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||=||||||=||||||
targets:2612   CUGUUGGAACUUGGAAGCAA   2631

2.5 PREDICTED: Glycine max AT-rich interactive domain-containing protein 2-like (LOC100819320), transcript variant X1, mRNA AT-rich interactive domain-containing protein 2-like(LOC100819320) coding protein psRNATarget
XM_003529593.3
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  |*||||||||||||||||=|
targets:8   GAGUUGAAACUUGAAAGCGA   27

2.5 PREDICTED: Glycine max uncharacterized LOC100777136 (LOC100777136), mRNA uncharacterized LOC100777136(LOC100777136) coding protein psRNATarget
XM_006585617.2
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  **|||||||||||||||*||
targets:125   AGGUUGAAACUUGAAAGGAA   144

2.5 PREDICTED: Glycine max probable mitochondrial adenine nucleotide transporter BTL1 (LOC100777341), mRNA probable mitochondrial adenine nucleotide transporter BTL1(LOC100777341) coding protein psRNATarget
XM_014773602.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1267   UUGUUGAAACUUGAAACCAU   1286

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X7, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773599.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1397   UUGUUGAAACUUGAAACCAU   1416

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X4, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773607.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1583   UUGUUGAAACUUGAAACCAU   1602

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X12, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773606.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1607   UUGUUGAAACUUGAAACCAU   1626

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X11, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773604.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1617   UUGUUGAAACUUGAAACCAU   1636

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X9, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773601.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1703   UUGUUGAAACUUGAAACCAU   1722

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X6, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014773600.1
ncRNA:20   CACAACUUUGAACUUUCGUU   1
  *|||||||||||||||*||*
targets:1703   UUGUUGAAACUUGAAACCAU   1722

2.5 PREDICTED: Glycine max uncharacterized LOC102668539 (LOC102668539), transcript variant X5, mRNA uncharacterized LOC102668539(LOC102668539) coding protein psRNATarget
XM_014777345.1
ncRNA:20   CACAACUUUGAACUUUC-GUU   1
  *||||||||||||||||-|||
targets:66   AUGUUGAAACUUGAAAGUCAA   86

3.0 PREDICTED: Glycine max ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like (LOC100787101), transcript variant X7, mRNA ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like(LOC100787101) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.