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BaseInfo

ncRNA ID	novel_gma_miR3399
Species	Glycine max
Class	miRNA
Genome position	Chr12:22838345-22838414 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451674;SRR1451676
Length	20
Mature sequence(if miRNA)	51 - UUCAAUAAAAGAACUUUUGG - 70
Stem-loop(if miRNA)	--        AA      -----UU   AU      AAA   UUCAAUAA  GAACUU       GGC  UUUCAU   A   ||||||||  ||||||       |||  ||||||   AAGUUGUU  CUUGGG       UCG  AGAGUG   U CC        -C      UUUCUCU   --      GUU
Stem-loop sequence	UUCAAUAAAAGAACUUUUGGCAUUUUCAUAAAAUUUGGUGAGAGCUUCUCUUUGGGUUCCUUGUUGAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774958.1	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||||||||||||||** targets:1304   GCAAAAGUUCUUUUAUUGCU   1323 Target Full Sequence	2.5	PREDICTED: Glycine max cyclic nucleotide-gated ion channel 1-like (LOC100817516), transcript variant X2, mRNA	cyclic nucleotide-gated ion channel 1-like(LOC100817516)	coding protein	psRNATarget
XM_006581570.2	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||||||||||||||** targets:1319   ACAAAAGUUCUUUUAUUGCU   1338 Target Full Sequence	2.5	PREDICTED: Glycine max cyclic nucleotide-gated ion channel 1-like (LOC100815774), transcript variant X2, mRNA	cyclic nucleotide-gated ion channel 1-like(LOC100815774)	coding protein	psRNATarget
XM_003526651.3	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||||||||||||||** targets:1353   ACAAAAGUUCUUUUAUUGCU   1372 Target Full Sequence	2.5	PREDICTED: Glycine max cyclic nucleotide-gated ion channel 1-like (LOC100815774), transcript variant X1, mRNA	cyclic nucleotide-gated ion channel 1-like(LOC100815774)	coding protein	psRNATarget
XM_006578860.2	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||||||||||||||** targets:1386   GCAAAAGUUCUUUUAUUGCU   1405 Target Full Sequence	2.5	PREDICTED: Glycine max cyclic nucleotide-gated ion channel 1-like (LOC100817516), transcript variant X1, mRNA	cyclic nucleotide-gated ion channel 1-like(LOC100817516)	coding protein	psRNATarget
NM_001252727.2	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||*||||||*|||||| targets:570   ACAAAAAUUCUUUAAUUGAA   589 Target Full Sequence	2.5	Glycine max uncharacterized LOC100815367 (LOC100815367), mRNA	uncharacterized LOC100815367(LOC100815367)	coding protein	psRNATarget
BT097886.1	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||*||||||*|||||| targets:572   ACAAAAAUUCUUUAAUUGAA   591 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-22P23 unknown mRNA	NA	coding protein	psRNATarget
XM_014773380.1	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||*||||||*|||||| targets:830   ACAAAAAUUCUUUAAUUGAA   849 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100815367 (LOC100815367), transcript variant X2, mRNA	uncharacterized LOC100815367(LOC100815367)	coding protein	psRNATarget
XM_006576192.2	ncRNA:20   GGUUUUCAAGAAAAUAACUU   1   *|||||*||||||*|||||| targets:905   ACAAAAAUUCUUUAAUUGAA   924 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100815367 (LOC100815367), transcript variant X1, mRNA	uncharacterized LOC100815367(LOC100815367)	coding protein	psRNATarget