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BaseInfo

ncRNA ID	novel_gma_miR3380
Species	Glycine max
Class	miRNA
Genome position	Chr13:28622809-28623034 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	1 - AAUUGGACGUUGACCAUUAG - 20
Stem-loop(if miRNA)	--               A                  U           C   C     A          A        C             UCAAUAAAUAUAACA   --C       U   AAUUGGACGUUGACC UUAGCAAGUGAUGUUGAC GUCACAUGUCA GUU UUAUU GAUGAUGACU UCAUGUGU AUGUUUUGAUUGG               AUG   AUUUCAU U   ||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||| |||||||||| |||||||| |||||||||||||               |||   ||||||| U   UUAACCUGCAACUGG AAUCGUUCACUAUAACUG CGGUGUACAGU CAA AAUAA CUACUACUGA AGUACACA UACAAGACUAACC               UAC   UGAGGUA U UG               C                  C           A   A     C          C        A             ---------------   AAU       C
Stem-loop sequence	AAUUGGACGUUGACCAUUAGCAAGUGAUGUUGACUGUCACAUGUCACGUUCUUAUUAGAUGAUGACUAUCAUGUGUCAUGUUUUGAUUGGUCAAUAAAUAUAACAAUGCAUUUCAUUUUUCAUGGAGUUAACAUCCAAUCAGAACAUAACACAUGACAGUCAUCAUCCAAUAAAAACAUGACAUGUGGCCGUCAAUAUCACUUGCUAACGGUCAACGUCCAAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006602607.2	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   ||||*||||||||||||||| targets:706   CUAACGGUCAACGUCCAAUU   725 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
XM_003516413.1	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   =|||*|||||||||=||||| targets:452   UUAACGGUCAACGUUCAAUU   471 Target Full Sequence	2.5	PREDICTED: Glycine max dehydration-responsive element-binding protein 3-like (LOC100786075), mRNA	dehydration-responsive element-binding protein 3-like(LOC100786075)	coding protein	psRNATarget
XM_006605785.2	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   =|||*|||||||||=||||| targets:1639   UUAACGGUCAACGUUCAAUU   1658 Target Full Sequence	2.5	PREDICTED: Glycine max protein DEHYDRATION-INDUCED 19 homolog 4-like (LOC102669504), mRNA	protein DEHYDRATION-INDUCED 19 homolog 4-like(LOC102669504)	coding protein	psRNATarget
HI410445.1	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   *|||*|||||||*||||||| targets:216   NUAACGGUCAACAUCCAAUU   235 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
JB170906.1	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   *|||*|||||||*||||||| targets:216   NUAACGGUCAACAUCCAAUU   235 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:20   GAUUACCAGUUGCAGGUUAA   1   *|||*|||||||*||||||| targets:216   NUAACGGUCAACAUCCAAUU   235 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget