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BaseInfo

ncRNA ID novel_gma_miR3377
Species Glycine max
Class miRNA
Genome position Chr12:4871835-4871928 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672;SRR1451676
Length 19
Mature sequence(if miRNA) 76 - UUUCUCUGUGUUUUGUUUU - 94
Stem-loop(if miRNA) --UUUC      -U       -   UU    AUUUGAA   UGC   AAAU
      UCUGUG  UUUGUUU UCA  GACA       CCA   AGU    U
      ||||||  ||||||| |||  ||||       |||   |||
      AGACAC  AAAUAGA GGU  UUGU       GGU   UCA    U
GGUAAC      UC       C   UU    ------G   UUC   AAUA
Stem-loop sequence UUUCUCUGUGUUUUGUUUUCAUUGACAAUUUGAACCAUGCAGUAAAUUUAUAAACUCUUUGGGUGUUUUUGGCAGAUAAACUCACAGACAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT099437.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||||||||||||||||||
targets:100   AAAACAAAACACAGAGAAA   118

0.0 Soybean clone JCVI-FLGm-23N4 unknown mRNA NA coding protein psRNATarget
BT099204.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||||||||||*|||||||
targets:118   AAAACAAAACAAAGAGAAA   136

1.5 Soybean clone JCVI-FLGm-13H13 unknown mRNA NA coding protein psRNATarget
XM_003527753.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||||||||||*|||||||
targets:289   AAAACAAAACAAAGAGAAA   307

1.5 PREDICTED: Glycine max E3 ubiquitin-protein ligase At1g63170-like (LOC100795904), mRNA E3 ubiquitin-protein ligase At1g63170-like(LOC100795904) coding protein psRNATarget
XM_003525596.3
ncRNA:19   UUUUG-UUUUGUGUCUCUUU   1
  |||||-||||||||||||||
targets:1549   AAAACCAAAACACAGAGAAA   1568

2.0 PREDICTED: Glycine max uncharacterized LOC100801011 (LOC100801011), mRNA uncharacterized LOC100801011(LOC100801011) coding protein psRNATarget
XM_006596221.2
ncRNA:19   UUUUG-UUUUGUGUCUCUUU   1
  |||||-||||||||||||||
targets:247   AAAACCAAAACACAGAGAAA   266

2.0 PREDICTED: Glycine max ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like (LOC100815980), mRNA ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like(LOC100815980) coding protein psRNATarget
BT095025.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |*||=||||||||||||||
targets:487   AUAAUAAAACACAGAGAAA   505

2.0 Soybean clone JCVI-FLGm-6J3 unknown mRNA NA coding protein psRNATarget
XM_006601820.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||=*||||||||||||||
targets:1085   AAAGAAAAACACAGAGAAA   1103

2.0 PREDICTED: Glycine max myb-like protein X (LOC100787189), mRNA myb-like protein X(LOC100787189) coding protein psRNATarget
XM_014774678.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||=|||||||||
targets:75   AAAAUAAAAUACAGAGAAA   93

2.5 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X3, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_003551999.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||=|||||||||
targets:69   AAAAUAAAAUACAGAGAAA   87

2.5 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X2, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_014774677.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||=|||||||||
targets:80   AAAAUAAAAUACAGAGAAA   98

2.5 PREDICTED: Glycine max thylakoid lumenal 16.5 kDa protein, chloroplastic-like (LOC100794397), transcript variant X1, mRNA thylakoid lumenal 16.5 kDa protein, chloroplastic-like(LOC100794397) coding protein psRNATarget
XM_003550473.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||||=|||||||
targets:6   AAAAUAAAACAUAGAGAAA   24

2.5 PREDICTED: Glycine max pyruvate, phosphate dikinase, chloroplastic-like (LOC100786435), transcript variant X2, mRNA pyruvate, phosphate dikinase, chloroplastic-like(LOC100786435) coding protein psRNATarget
XM_006600266.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||||=|||||||
targets:30   AAAAUAAAACAUAGAGAAA   48

2.5 PREDICTED: Glycine max pyruvate, phosphate dikinase, chloroplastic-like (LOC100786435), transcript variant X1, mRNA pyruvate, phosphate dikinase, chloroplastic-like(LOC100786435) coding protein psRNATarget
XM_003556262.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||=||||*||||||||||
targets:1004   AAAGCAAAUCACAGAGAAA   1022

2.5 PREDICTED: Glycine max AT-rich binding protein-like (LOC100812373), mRNA AT-rich binding protein-like(LOC100812373) coding protein psRNATarget
NM_001255831.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |=|||||||||||||*|||
targets:30   AGAACAAAACACAGAAAAA   48

2.5 Glycine max uncharacterized LOC100795867 (LOC100795867), mRNA uncharacterized LOC100795867(LOC100795867) coding protein psRNATarget
BT096923.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |=|||||||||||||*|||
targets:32   AGAACAAAACACAGAAAAA   50

2.5 Soybean clone JCVI-FLGm-25L14 unknown mRNA NA coding protein psRNATarget
BT093469.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=|||||||*||||||
targets:356   AAAAUAAAACACUGAGAAA   374

2.5 Soybean clone JCVI-FLGm-24K11 unknown mRNA NA coding protein psRNATarget
XM_003542729.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=||||*|||||||||
targets:14   AAAAUAAAAAACAGAGAAA   32

2.5 PREDICTED: Glycine max protein SAD1/UNC-84 domain protein 1-like (LOC100796587), mRNA protein SAD1/UNC-84 domain protein 1-like(LOC100796587) coding protein psRNATarget
XM_014765290.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||=|||||||*||||||
targets:423   AAAAUAAAACACUGAGAAA   441

2.5 PREDICTED: Glycine max cyclic dof factor 2-like (LOC100775675), mRNA cyclic dof factor 2-like(LOC100775675) coding protein psRNATarget
XM_006577756.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |=|||||||||||||*|||
targets:107   AGAACAAAACACAGAAAAA   125

2.5 PREDICTED: Glycine max uncharacterized LOC100795867 (LOC100795867), transcript variant X1, mRNA uncharacterized LOC100795867(LOC100795867) coding protein psRNATarget
XM_006602030.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||=|||||||||||*|||
targets:97   AAAGCAAAACACAGAAAAA   115

2.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 66-like (LOC100787878), transcript variant X2, mRNA zinc finger CCCH domain-containing protein 66-like(LOC100787878) coding protein psRNATarget
XM_006602029.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |||=|||||||||||*|||
targets:97   AAAGCAAAACACAGAAAAA   115

2.5 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 66-like (LOC100787878), transcript variant X1, mRNA zinc finger CCCH domain-containing protein 66-like(LOC100787878) coding protein psRNATarget
XM_006586999.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  ||||*||||=|||||||||
targets:3   AAAAAAAAAUACAGAGAAA   21

2.5 PREDICTED: Glycine max respiratory burst oxidase homolog protein E-like (LOC100805697), transcript variant X1, mRNA respiratory burst oxidase homolog protein E-like(LOC100805697) coding protein psRNATarget
XM_006593449.2
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  =||=||||||||||||||=
targets:1087   GAAGCAAAACACAGAGAAG   1105

3.0 PREDICTED: Glycine max putative clathrin assembly protein At4g25940 (LOC100815975), mRNA putative clathrin assembly protein At4g25940(LOC100815975) coding protein psRNATarget
XM_006593693.2
ncRNA:19   UUUUG-UUUUGUGUCUCUUU   1
  |=|||-||||||||||||||
targets:110   AGAACCAAAACACAGAGAAA   129

3.0 PREDICTED: Glycine max ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like (LOC100794322), mRNA ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial-like(LOC100794322) coding protein psRNATarget
XM_003542001.3
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  =||||=||||||||||||*
targets:32   GAAACGAAACACAGAGAAC   50

3.0 PREDICTED: Glycine max outer envelope protein 80, chloroplastic-like (LOC100801556), mRNA outer envelope protein 80, chloroplastic-like(LOC100801556) coding protein psRNATarget
BT096871.1
ncRNA:19   UUUUGUUUUGUGUCUCUUU   1
  |*|==||||||||||||||
targets:483   AUAGUAAAACACAGAGAAA   501

3.0 Soybean clone JCVI-FLGm-21C24 unknown mRNA NA coding protein psRNATarget
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