Search result

BaseInfo

ncRNA ID	novel_gma_miR3370
Species	Glycine max
Class	miRNA
Genome position	Chr1:48520405-48520519 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	21
Mature sequence(if miRNA)	95 - AAGCCUUUUACGGAACAAUAC - 115
Stem-loop(if miRNA)	--          C                              CU       A   A   AAGCCUUUUA GGAACAAUACGGAUCAACAUGAUCCGUAAG  UUUUACG AUU A   |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| C   UUCGGAAAAU CCUUGUUAUGCCUAGUUGUACUAGGCAUUU  AGAAUGC UAG U CA          A                              UC       C   U
Stem-loop sequence	AAGCCUUUUACGGAACAAUACGGAUCAACAUGAUCCGUAAGCUUUUUACGAAUUAACUUGAUCCGUAAGACUUUUACGGAUCAUGUUGAUCCGUAUUGUUCCAUAAAAGGCUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK246037.1	ncRNA:21   CAUAACAAGGCAUUUUCCGAA   1   |||*||||||||||||*|||| targets:682   GUAGUGUUCCGUAAAAAGCUU   702 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-49-H03	NA	coding protein	psRNATarget
NM_001251391.2	ncRNA:21   CAUAACAAGGCAUUUUCCGAA   1   |||*||||||||||||*|||| targets:731   GUAGUGUUCCGUAAAAAGCUU   751 Target Full Sequence	2.5	Glycine max V-type proton ATPase subunit E-like protein (LOC100500452), mRNA	uncharacterized LOC100500452(LOC100500452)	coding protein	psRNATarget
AK285829.1	ncRNA:21   CAUAACAAGGCAUUUUCCGAA   1   |||*||||||||||||*|||| targets:725   GUAGUGUUCCGUAAAAAGCUU   745 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-17-C14	NA	coding protein	psRNATarget
XM_006584679.2	ncRNA:21   CAUAACAAGGCAUUUUCCGAA   1   |||*||||||||||||*|||| targets:758   GUAGUGUUCCGUAAAAAGCUU   778 Target Full Sequence	2.5	PREDICTED: Glycine max V-type proton ATPase subunit E-like (LOC106794127), mRNA	V-type proton ATPase subunit E-like(LOC106794127)	coding protein	psRNATarget