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BaseInfo

ncRNA ID novel_gma_miR3364
Species Glycine max
Class miRNA
Genome position Chr8:14613607-14613695 [+]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 1 - GAGUGAUAGUGAAAAAAGGC - 20
Stem-loop(if miRNA) --   U  U         --A    --------UCUCU     -UU    A
  GAG GA AGUGAAAAA   GGCC             AGUAG   UCAA C
  ||| || |||||||||   ||||             |||||   ||||
  UUC CU UUAUUUUUU   UUGG             UCGUU   AGUU U
CU   -  -         GUU    UUUCUUUUCUACU     GCU    U
Stem-loop sequence GAGUGAUAGUGAAAAAAGGCCUCUCUAGUAGUUUCAAACUUUUGAUCGUUGCUUCAUCUUUUCUUUGGUUUUGUUUUUUAUUUCCUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001248529.2
ncRNA:20   CGGAAAAAAGUGAUAGUGAG   1
  *|||*||||||||*||||||
targets:507   UCCUCUUUUCACUCUCACUC   526

2.5 Glycine max uncharacterized LOC100306210 (LOC100306210), mRNA uncharacterized LOC100306210(LOC100306210) coding protein psRNATarget
BT090206.1
ncRNA:20   CGGAAAAAAGUGAUAGUGAG   1
  *|||*||||||||*||||||
targets:511   UCCUCUUUUCACUCUCACUC   530

2.5 Soybean clone JCVI-FLGm-3L20 unknown mRNA NA coding protein psRNATarget
XM_003545755.3
ncRNA:20   CGGAAAAAAGUGAUAGUGAG   1
  *|||*||||||||*||||||
targets:1014   UCCUCUUUUCACUCUCACUC   1033

2.5 PREDICTED: Glycine max calcium-binding protein PBP1-like (LOC100799975), mRNA calcium-binding protein PBP1-like(LOC100799975) coding protein psRNATarget