Search result

BaseInfo

ncRNA ID	novel_gma_miR3360
Species	Glycine max
Class	miRNA
Genome position	Chr8:8179805-8179862 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	19
Mature sequence(if miRNA)	40 - CUUUAAGCAUGAUUUCUGA - 58
Stem-loop(if miRNA)	--           --    CACAA   U      AGAAAUCAUGC  AAGG     UCU UGCA   |||||||||||  ||||     ||| |||A   UCUUUAGUACG  UUUC     AGG ACGU AG           AA    ---AC   U
Stem-loop sequence	AGAAAUCAUGCAAGGCACAAUCUUUGCAAUGCAUGGACACUUUAAGCAUGAUUUCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT094025.1	ncRNA:19   AGUCUUUAGUACGAAUUUC   1   |||||||||=||||||||| targets:198   UCAGAAAUCGUGCUUAAAG   216 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-18E23 unknown mRNA	NA	coding protein	psRNATarget
NM_001252718.1	ncRNA:19   AGUCUUUAGUACGAAUUUC   1   |||||||||=||||||||| targets:198   UCAGAAAUCGUGCUUAAAG   216 Target Full Sequence	1.5	Glycine max uncharacterized LOC100808454 (LOC100808454), mRNA	uncharacterized LOC100808454(LOC100808454)	coding protein	psRNATarget
BT096130.1	ncRNA:19   AGUCUUUAGUACGAAUUUC   1   *||||||||=||||||||| targets:228   CCAGAAAUCGUGCUUAAAG   246 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-20M4 unknown mRNA	NA	coding protein	psRNATarget
XM_003532490.3	ncRNA:19   AGUCUUUAGUACGAAUUUC   1   *||||||||=||||||||| targets:124   CCAGAAAUCGUGCUUAAAG   142 Target Full Sequence	2.5	PREDICTED: Glycine max neurofilament medium polypeptide (LOC100796289), mRNA	neurofilament medium polypeptide(LOC100796289)	coding protein	psRNATarget
XM_003549342.3	ncRNA:19   AGUCUUUAGUACGAAUUUC   1   ||||||||*|||||||||* targets:2226   UCAGAAAUAAUGCUUAAAA   2244 Target Full Sequence	2.5	PREDICTED: Glycine max proteinaceous RNase P 1, chloroplastic/mitochondrial-like (LOC100787851), mRNA	proteinaceous RNase P 1, chloroplastic/mitochondrial-like(LOC100787851)	coding protein	psRNATarget