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BaseInfo

ncRNA ID novel_gma_miR3355
Species Glycine max
Class miRNA
Genome position Chr7:79788-79929 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 123 - CAAAACAAAAAAAAUUAAAA - 142
Stem-loop(if miRNA) --C           AA     A   C  AC    A     A           U      ---------   U  AA
   AAAACAAAAAA  UUAAA CAU AA  AUUA AGCAA AAUUACUAAAA CAUAAA         AGA UA  A
   |||||||||||  ||||| ||| ||  |||| ||||| ||||||||||| ||||||         ||| ||
   UUUUGUUUUUU  AAUUU GUA UU  UAAU UCGUU UUAAUGAUUUU GUAUUU         UCU AU  A
UAA           -A     A   U  CC    C     C           U      GGAACUUUC   U  AC
Stem-loop sequence CAAAACAAAAAAAAUUAAAACAUCAAACAUUAAAGCAAAAAUUACUAAAAUCAUAAAAGAUUAAAAACAUAUUCUCUUUCAAGGUUUAUGUUUUUAGUAAUUCUUGCUCUAAUCCUUUAUGAUUUAAAUUUUUUGUUUUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006592525.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*|||||||||||||||
targets:1459   UUUUCAUUUUUUUUGUUUUG   1478

1.0 PREDICTED: Glycine max uncharacterized LOC100807380 (LOC100807380), transcript variant X2, mRNA uncharacterized LOC100807380(LOC100807380) coding protein psRNATarget
XM_003541067.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*|||||||||||||||
targets:1414   UUUUCAUUUUUUUUGUUUUG   1433

1.0 PREDICTED: Glycine max uncharacterized LOC100807380 (LOC100807380), transcript variant X1, mRNA uncharacterized LOC100807380(LOC100807380) coding protein psRNATarget
XM_006587804.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*|||||
targets:2807   UUUUAAUUUUUUUUAUUUUG   2826

1.5 PREDICTED: Glycine max vacuolar protein 8-like (LOC100781453), transcript variant X3, mRNA vacuolar protein 8-like(LOC100781453) coding protein psRNATarget
XM_003534544.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*|||||
targets:2470   UUUUAAUUUUUUUUAUUUUG   2489

1.5 PREDICTED: Glycine max vacuolar protein 8-like (LOC100781453), transcript variant X2, mRNA vacuolar protein 8-like(LOC100781453) coding protein psRNATarget
XM_006589644.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||*|||||||||||
targets:2204   UUUUAAUUAUUUUUGUUUUG   2223

1.5 PREDICTED: Glycine max probable pectate lyase 18 (LOC100789303), mRNA probable pectate lyase 18(LOC100789303) coding protein psRNATarget
XM_006587803.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*|||||
targets:1921   UUUUAAUUUUUUUUAUUUUG   1940

1.5 PREDICTED: Glycine max vacuolar protein 8-like (LOC100781453), transcript variant X1, mRNA vacuolar protein 8-like(LOC100781453) coding protein psRNATarget
XM_006576534.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*|||||
targets:1367   UUUUAAUUUUUUUUUUUUUG   1386

1.5 PREDICTED: Glycine max serine/threonine-protein kinase pakD-like (LOC102668134), mRNA serine/threonine-protein kinase pakD-like(LOC102668134) coding protein psRNATarget
BT096009.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*|||||
targets:415   UUUUAAUUUUUUUUUUUUUG   434

1.5 Soybean clone JCVI-FLGm-20A4 unknown mRNA NA coding protein psRNATarget
XM_014761912.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||||||||||||||*||
targets:4700   AUUUAAUUUUUUUUGUUCUG   4719

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20090 (LOC100801994), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g20090(LOC100801994) coding protein psRNATarget
XM_014761913.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||||||||||||||*||
targets:4452   AUUUAAUUUUUUUUGUUCUG   4471

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20090 (LOC100801994), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At4g20090(LOC100801994) coding protein psRNATarget
XM_006586881.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||||||||||||||*||
targets:3407   AUUUAAUUUUUUUUGUUCUG   3426

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20090 (LOC100801994), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At4g20090(LOC100801994) coding protein psRNATarget
XM_006586880.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||||||||||||||*||
targets:3195   AUUUAAUUUUUUUUGUUCUG   3214

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20090 (LOC100801994), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At4g20090(LOC100801994) coding protein psRNATarget
XM_006586883.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||||||||||||||*||
targets:3106   AUUUAAUUUUUUUUGUUCUG   3125

1.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g20090 (LOC100801994), transcript variant X5, mRNA pentatricopeptide repeat-containing protein At4g20090(LOC100801994) coding protein psRNATarget
XM_003524999.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||=||||||||||||||*
targets:1202   UUUUGAUUUUUUUUGUUUUU   1221

2.0 PREDICTED: Glycine max uncharacterized LOC100790782 (LOC100790782), transcript variant X1, mRNA uncharacterized LOC100790782(LOC100790782) coding protein psRNATarget
XM_003533263.3
ncRNA:20   AAAAU-UAAAAAAAACAAAAC   1
  *||||-|||||||||||||||
targets:306   CUUUAUAUUUUUUUUGUUUUG   326

2.0 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100814432), transcript variant X1, mRNA transcription repressor KAN1-like(LOC100814432) coding protein psRNATarget
XM_006587394.2
ncRNA:20   AAAAU-UAAAAAAAACAAAAC   1
  *||||-|||||||||||||||
targets:311   CUUUAUAUUUUUUUUGUUUUG   331

2.0 PREDICTED: Glycine max transcription repressor KAN1-like (LOC100814432), transcript variant X3, mRNA transcription repressor KAN1-like(LOC100814432) coding protein psRNATarget
XM_006575357.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *||||=|||||||||||||*
targets:1798   GUUUAGUUUUUUUUGUUUUU   1817

2.0 PREDICTED: Glycine max RING-H2 finger protein ATL63-like (LOC102665763), mRNA RING-H2 finger protein ATL63-like(LOC102665763) coding protein psRNATarget
XM_014774834.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*||||||||||||||*
targets:1   UUUUUAUUUUUUUUGUUUUU   20

2.0 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797616), transcript variant X2, mRNA protein MEI2-like 1(LOC100797616) coding protein psRNATarget
XM_006578667.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*||||||||||||||*
targets:1   UUUUUAUUUUUUUUGUUUUU   20

2.0 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797616), transcript variant X1, mRNA protein MEI2-like 1(LOC100797616) coding protein psRNATarget
XM_006578669.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*||||||||||||||*
targets:1   UUUUUAUUUUUUUUGUUUUU   20

2.0 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797616), transcript variant X4, mRNA protein MEI2-like 1(LOC100797616) coding protein psRNATarget
XM_006578668.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*||||||||||||||*
targets:1   UUUUUAUUUUUUUUGUUUUU   20

2.0 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797616), transcript variant X3, mRNA protein MEI2-like 1(LOC100797616) coding protein psRNATarget
XM_006581719.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  |||||*|||||||||||||*
targets:2083   UUUUAUUUUUUUUUGUUUUA   2102

2.0 PREDICTED: Glycine max amino acid permease 3 (LOC100816507), transcript variant X1, mRNA amino acid permease 3(LOC100816507) coding protein psRNATarget
XM_003556156.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  |||||*|||||||||||||*
targets:1898   UUUUAUUUUUUUUUGUUUUU   1917

2.0 PREDICTED: Glycine max dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic (LOC100799926), mRNA dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic(LOC100799926) coding protein psRNATarget
XM_006581720.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  |||||*|||||||||||||*
targets:1888   UUUUAUUUUUUUUUGUUUUA   1907

2.0 PREDICTED: Glycine max amino acid permease 3 (LOC100816507), transcript variant X2, mRNA amino acid permease 3(LOC100816507) coding protein psRNATarget
XM_003524922.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*||||||||||||||*
targets:1163   UUUUUAUUUUUUUUGUUUUA   1182

2.0 PREDICTED: Glycine max probable WRKY transcription factor 65 (LOC100793777), mRNA probable WRKY transcription factor 65(LOC100793777) coding protein psRNATarget
XM_006589237.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:57   UUUUAAUUUUUUUUAUUUUU   76

2.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X1, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589238.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:58   UUUUAAUUUUUUUUAUUUUU   77

2.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X2, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589241.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:58   UUUUAAUUUUUUUUAUUUUU   77

2.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X5, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_006589242.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:59   UUUUAAUUUUUUUUAUUUUU   78

2.5 PREDICTED: Glycine max MATH domain-containing protein At5g43560-like (LOC100799509), transcript variant X6, mRNA MATH domain-containing protein At5g43560-like(LOC100799509) coding protein psRNATarget
XM_003540421.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:2008   UUUUAAUUUUUUUUUUUUUA   2027

2.5 PREDICTED: Glycine max probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 (LOC100796209), mRNA probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1(LOC100796209) coding protein psRNATarget
XM_003520067.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:2046   UUUUAAUUUUUUUUUUUUUU   2065

2.5 PREDICTED: Glycine max ninja-family protein AFP2-like (LOC100812680), mRNA ninja-family protein AFP2-like(LOC100812680) coding protein psRNATarget
XM_003537868.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1763   UUUUAAUUUUUUUUUUUUUU   1782

2.5 PREDICTED: Glycine max B3 domain-containing transcription factor VRN1-like (LOC100815020), transcript variant X1, mRNA B3 domain-containing transcription factor VRN1-like(LOC100815020) coding protein psRNATarget
XM_006590854.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1637   UUUUAAUUUUUUUUUUUUUU   1656

2.5 PREDICTED: Glycine max B3 domain-containing transcription factor VRN1-like (LOC100815020), transcript variant X2, mRNA B3 domain-containing transcription factor VRN1-like(LOC100815020) coding protein psRNATarget
XM_006590855.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1618   UUUUAAUUUUUUUUUUUUUU   1637

2.5 PREDICTED: Glycine max B3 domain-containing transcription factor VRN1-like (LOC100815020), transcript variant X3, mRNA B3 domain-containing transcription factor VRN1-like(LOC100815020) coding protein psRNATarget
NM_001250233.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1164   UUUUAAUUUUUUUUUUUUUU   1183

2.5 Glycine max bZIP transcription factor bZIP111 (BZIP111), mRNA bZIP transcription factor bZIP111(BZIP111) coding protein psRNATarget
BT097337.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1119   UUUUAAUUUUUUUUUUUUUA   1138

2.5 Soybean clone JCVI-FLGm-21L14 unknown mRNA NA coding protein psRNATarget
XM_003542525.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1209   UUUUAAUUUUUUUUUUUUUU   1228

2.5 PREDICTED: Glycine max F-box protein PP2-A15-like (LOC100775493), transcript variant X1, mRNA F-box protein PP2-A15-like(LOC100775493) coding protein psRNATarget
XM_003555258.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:898   UUUUAAUUUUUUUUCUUUUU   917

2.5 PREDICTED: Glycine max agamous-like MADS-box protein AGL62 (LOC100779916), mRNA agamous-like MADS-box protein AGL62(LOC100779916) coding protein psRNATarget
XM_006596365.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:1097   UUUUAAUUUUUUUUUUUUUU   1116

2.5 PREDICTED: Glycine max selT-like protein (LOC100794131), mRNA selT-like protein(LOC100794131) coding protein psRNATarget
XM_003521074.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||||||||||||*||||*
targets:39   UUUUAAUUUUUUUUAUUUUA   58

2.5 PREDICTED: Glycine max 28S ribosomal protein S33, mitochondrial-like (LOC100775975), mRNA 28S ribosomal protein S33, mitochondrial-like(LOC100775975) coding protein psRNATarget
XM_014762132.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=||||||||*||||||
targets:484   AUUUGAUUUUUUUGGUUUUG   503

2.5 PREDICTED: Glycine max SKP1-like protein 21 (LOC100775387), transcript variant X2, mRNA SKP1-like protein 21(LOC100775387) coding protein psRNATarget
XM_006593921.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=|||||||||*|||||
targets:6   AUUUGAUUUUUUUUUUUUUG   25

2.5 PREDICTED: Glycine max GPI ethanolamine phosphate transferase 3 (LOC100796578), transcript variant X4, mRNA GPI ethanolamine phosphate transferase 3(LOC100796578) coding protein psRNATarget
XM_003549755.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=||||*||||||||||
targets:1938   GUUUGAUUUGUUUUGUUUUG   1957

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X1, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_014769910.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=||||*||||||||||
targets:1869   GUUUGAUUUGUUUUGUUUUG   1888

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X2, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_014769911.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=||||*||||||||||
targets:1858   GUUUGAUUUGUUUUGUUUUG   1877

2.5 PREDICTED: Glycine max uncharacterized LOC100791390 (LOC100791390), transcript variant X3, mRNA uncharacterized LOC100791390(LOC100791390) coding protein psRNATarget
XM_014761530.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  *|||=||||||||||||*||
targets:13   GUUUGAUUUUUUUUGUUCUG   32

2.5 PREDICTED: Glycine max protein vip1-like (LOC100797381), transcript variant X3, mRNA protein vip1-like(LOC100797381) coding protein psRNATarget
XM_003524663.3
ncRNA:20   AAAAU---UAAAAAAAACAAAAC   1
  |||||---|||||||||||||||
targets:369   UUUUAUUUAUUUUUUUUGUUUUG   391

3.0 PREDICTED: Glycine max AT-hook motif nuclear-localized protein 23-like (LOC100789193), mRNA AT-hook motif nuclear-localized protein 23-like(LOC100789193) coding protein psRNATarget
XM_006598803.2
ncRNA:20   AA-AAUUAAAAAAAACAAAAC   1
  ||-|||||||||||||||||*
targets:1966   UUGUUAAUUUUUUUUGUUUUC   1986

3.0 PREDICTED: Glycine max transcription factor bHLH57-like (LOC100783582), transcript variant X1, mRNA transcription factor bHLH57-like(LOC100783582) coding protein psRNATarget
XM_006598804.2
ncRNA:20   AA-AAUUAAAAAAAACAAAAC   1
  ||-|||||||||||||||||*
targets:1705   UUGUUAAUUUUUUUUGUUUUC   1725

3.0 PREDICTED: Glycine max transcription factor bHLH57-like (LOC100783582), transcript variant X2, mRNA transcription factor bHLH57-like(LOC100783582) coding protein psRNATarget
AK245956.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||*||=|||||||||||||*
targets:1455   UUGUAGUUUUUUUUGUUUUA   1474

3.0 Glycine max cDNA, clone: GMFL01-47-C07 NA coding protein psRNATarget
XM_003555234.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  |||||=*||||||||||||*
targets:2966   UUUUAGAUUUUUUUGUUUUU   2985

3.0 PREDICTED: Glycine max homeobox protein HAT3.1-like (LOC100811458), transcript variant X1, mRNA homeobox protein HAT3.1-like(LOC100811458) coding protein psRNATarget
XM_014768847.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||=*|||||||||||||*
targets:288   UUUUGUUUUUUUUUGUUUUC   307

3.0 PREDICTED: Glycine max probable methyltransferase PMT20 (LOC100807458), transcript variant X3, mRNA probable methyltransferase PMT20(LOC100807458) coding protein psRNATarget
XM_014768848.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||=*|||||||||||||*
targets:288   UUUUGUUUUUUUUUGUUUUC   307

3.0 PREDICTED: Glycine max probable methyltransferase PMT20 (LOC100807458), transcript variant X10, mRNA probable methyltransferase PMT20(LOC100807458) coding protein psRNATarget
XM_014772638.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*=|||||||||||||*
targets:23   UUUUUGUUUUUUUUGUUUUC   42

3.0 PREDICTED: Glycine max uncharacterized LOC100784039 (LOC100784039), transcript variant X4, mRNA uncharacterized LOC100784039(LOC100784039) coding protein psRNATarget
XM_014769812.1
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*=|||||||||||||*
targets:524   UUUUUGUUUUUUUUGUUUUU   543

3.0 PREDICTED: Glycine max coronatine-insensitive protein 1-like (LOC100819069), mRNA coronatine-insensitive protein 1-like(LOC100819069) coding protein psRNATarget
XM_003549154.3
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*=|||||||||||||*
targets:2234   UUUUUGUUUUUUUUGUUUUU   2253

3.0 PREDICTED: Glycine max uncharacterized LOC100803211 (LOC100803211), transcript variant X3, mRNA uncharacterized LOC100803211(LOC100803211) coding protein psRNATarget
XM_006601028.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*=|||||||||||||*
targets:1987   UUUUUGUUUUUUUUGUUUUU   2006

3.0 PREDICTED: Glycine max uncharacterized LOC100803211 (LOC100803211), transcript variant X1, mRNA uncharacterized LOC100803211(LOC100803211) coding protein psRNATarget
XM_006601027.2
ncRNA:20   AAAAUUAAAAAAAACAAAAC   1
  ||||*=|||||||||||||*
targets:1965   UUUUUGUUUUUUUUGUUUUU   1984

3.0 PREDICTED: Glycine max uncharacterized LOC100803211 (LOC100803211), transcript variant X2, mRNA uncharacterized LOC100803211(LOC100803211) coding protein psRNATarget
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