| ncRNA ID | ath-miR5655 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:18902541-18903035 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 83 - AAGUAGACACAUAAGAAGGAG - 103 |
| Stem-loop(if miRNA) |
AA UUAUACA ACU - GA -AAU UACCA AG -------GGAGAGA CUUGGAAGAGAGGCGGAGAAGCAGAGAUGACAUAGCUAAUAGCUUCGCUUGGUUGCUCUG ACAUCAAGUAAGGGUUGGUGGUGGUGGAGGAGGAGGAGAACAUACGAAGGGUACUGUGGCGGCAUCUCUGGGGAAGAGUAAGAAGUAGACACAUAAGAAGGAGAAAAACGA GAGG AAAAGA AGAGAGAG GAUA UUU UAAU GAGAA UUUGC GGU U ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||| ||| |||| ||||| ||||| ||| UGUAGUUCAUUCCCAACCACCACCACCUCCUCCUCCUCUUGUAUGCUUCCCAUGACACCGCCGUAGAGACCCCUUCUCAUUCUUCAUCUGUGUAUUCUUCCUCUUUUUGCU CUCU UUUUUU UCUCUUUC CUGU AGA AUUA CUCUU GGAUG CAC G -- UUGCACC AUU U AG GAUC -UUAA -G AAGAGGAAAAAGAA CGUUCGUGAAACCAGAAUUAAUCUAGAACUGAUUGAGCUUUUGGGAAAUCUCUUCUUUGU |
| Stem-loop sequence | ACAUCAAGUAAGGGUUGGUGGUGGUGGAGGAGGAGGAGAACAUACGAAGGGUACUGUGGCGGCAUCUCUGGGGAAGAGUAAGAAGUAGACACAUAAGAAGGAGAAAAACGAAAGAGGUUAUACAAAAAGAACUAGAGAGAGGAUAGAUUUAAUUAAUUACCAGAGAAAGUUUGCGGAGAGAGGUCUUGGAAGAGAGGCGGAGAAGCAGAGAUGACAUAGCUAAUAGCUUCGCUUGGUUGCUCUGUGUGUUUCUUCUCUAAAGGGUUUUCGAGUUAGUCAAGAUCUAAUUAAGACCAAAGUGCUUGCCACAAGAAAAAGGAGAAGUAGGGUUCUCAAUUAUUACUAGAGAGAUGUCUCUUUCUCUUUAUUUUUUCCACGUUUCUCUCGUUUUUCUCCUUCUUAUGUGUCUACUUCUUACUCUUCCCCAGAGAUGCCGCCACAGUACCCUUCGUAUGUUCUCCUCCUCCUCCACCACCACCAACCCUUACUUGAUGU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_120259.4 |
|
2.5 | Arabidopsis thaliana CBL-interacting protein kinase 15 (CIPK15), mRNA | CBL-interacting protein kinase 15(CIPK15) | coding protein | psRNATarget | |||||||||
| NM_001036743.1 |
|
2.5 | Arabidopsis thaliana CBL-interacting protein kinase 15 (CIPK15), mRNA | CBL-interacting protein kinase 15(CIPK15) | coding protein | psRNATarget | |||||||||
| D30622.1 |
|
2.5 | Arabidopsis thaliana mRNA for novel serine/threonine protein kinase, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001203274.1 |
|
2.5 | Arabidopsis thaliana CBL-interacting protein kinase 15 (CIPK15), mRNA | CBL-interacting protein kinase 15(CIPK15) | coding protein | psRNATarget | |||||||||
| AK228889.1 |
|
2.5 | Arabidopsis thaliana mRNA for serine/threonine protein kinase ATPK10, complete cds, clone: RAFL16-20-K01 | NA | coding protein | psRNATarget |
| 1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |