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BaseInfo

ncRNA ID novel_gma_miR3350
Species Glycine max
Class miRNA
Genome position Chr7:16361815-16361894 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 1 - UUUUUAAAAAAACUGAUUUU - 20
Stem-loop(if miRNA) --C                  C        AAA     GAG
   AUCAGUUUUUUUAAAAAC GAUGUUAA   AUGUU   G
   |||||||||||||||||| ||||||||   |||||   U
   UAGUCAAAAAAAUUUUUG CUACAAUU   UACAG   A
UUU                  A        ---     UGA
Stem-loop sequence CAUCAGUUUUUUUAAAAACCGAUGUUAAAAAAUGUUGAGGUAAGUGACAUUUAACAUCAGUUUUUAAAAAAACUGAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771314.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  ||||||=|||||||||||=|
targets:597   AAAAUCGGUUUUUUUAAAGA   616

2.5 PREDICTED: Glycine max uncharacterized LOC100306127 (LOC100306127), transcript variant X1, mRNA uncharacterized LOC100306127(LOC100306127) coding protein psRNATarget
XM_014768009.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  =||||||||||||||=|||=
targets:163   GAAAUCAGUUUUUUUGAAAG   182

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100791519), transcript variant X1, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100791519) coding protein psRNATarget
XM_006597233.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  =||||||||||||||=|||=
targets:356   GAAAUCAGUUUUUUUGAAAG   375

2.5 PREDICTED: Glycine max ankyrin repeat-containing protein At5g02620-like (LOC100791519), transcript variant X2, mRNA ankyrin repeat-containing protein At5g02620-like(LOC100791519) coding protein psRNATarget
XM_006596972.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *||||=|||||*||||||||
targets:12   CAAAUUAGUUUAUUUAAAAA   31

2.5 PREDICTED: Glycine max putative hydrolase C777.06c-like (LOC100794862), transcript variant X1, mRNA putative hydrolase C777.06c-like(LOC100794862) coding protein psRNATarget
BT094590.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  |||||*|||*||||||||||
targets:365   AAAAUAAGUAUUUUUAAAAA   384

2.5 Soybean clone JCVI-FLGm-14B20 unknown mRNA NA coding protein psRNATarget
XM_006576335.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *||||||*|||||||||||=
targets:54   CAAAUCACUUUUUUUAAAAG   73

2.5 PREDICTED: Glycine max putative acyl-activating enzyme 19 (LOC100820175), transcript variant X4, mRNA putative acyl-activating enzyme 19(LOC100820175) coding protein psRNATarget
XM_014772634.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *|||||||||||*||||||=
targets:2496   CAAAUCAGUUUUAUUAAAAG   2515

2.5 PREDICTED: Glycine max pre-mRNA-processing protein 40A-like (LOC100777778), transcript variant X2, mRNA pre-mRNA-processing protein 40A-like(LOC100777778) coding protein psRNATarget
XM_006605942.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *|||||||||||*||||||=
targets:2499   CAAAUCAGUUUUAUUAAAAG   2518

2.5 PREDICTED: Glycine max pre-mRNA-processing protein 40A-like (LOC100777778), transcript variant X3, mRNA pre-mRNA-processing protein 40A-like(LOC100777778) coding protein psRNATarget
XM_006576334.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *||||||*|||||||||||=
targets:55   CAAAUCACUUUUUUUAAAAG   74

2.5 PREDICTED: Glycine max putative acyl-activating enzyme 19 (LOC100820175), transcript variant X3, mRNA putative acyl-activating enzyme 19(LOC100820175) coding protein psRNATarget
XM_006576332.2
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *||||||*|||||||||||=
targets:45   CAAAUCACUUUUUUUAAAAG   64

2.5 PREDICTED: Glycine max putative acyl-activating enzyme 19 (LOC100820175), transcript variant X1, mRNA putative acyl-activating enzyme 19(LOC100820175) coding protein psRNATarget
XM_014772633.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  *|||||||||||*||||||=
targets:2499   CAAAUCAGUUUUAUUAAAAG   2518

2.5 PREDICTED: Glycine max pre-mRNA-processing protein 40A-like (LOC100777778), transcript variant X1, mRNA pre-mRNA-processing protein 40A-like(LOC100777778) coding protein psRNATarget
XM_003530682.3
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  =||||*||||*|||||||||
targets:1357   GAAAUGAGUUGUUUUAAAAA   1376

2.5 PREDICTED: Glycine max GDSL esterase/lipase At4g10955-like (LOC100783570), mRNA GDSL esterase/lipase At4g10955-like(LOC100783570) coding protein psRNATarget
XM_014779347.1
ncRNA:20   UUUUAGUCAAAAAAAUUUUU   1
  =||||*|*||||||||||||
targets:501   GAAAUAAUUUUUUUUAAAAA   520

2.5 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g14390 (LOC100789785), mRNA probable LRR receptor-like serine/threonine-protein kinase At1g14390(LOC100789785) coding protein psRNATarget
XM_006593905.2
ncRNA:20   UUUUAGUC-AAAAAAAUUUUU   1
  =|||||||-||||||||||||
targets:55   GAAAUCAGAUUUUUUUAAAAA   75

3.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC3 (LOC100810079), transcript variant X4, mRNA phosphoinositide phosphatase SAC3(LOC100810079) coding protein psRNATarget
XM_003542334.3
ncRNA:20   UUUUAGUC-AAAAAAAUUUUU   1
  =|||||||-||||||||||||
targets:55   GAAAUCAGAUUUUUUUAAAAA   75

3.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC3 (LOC100810079), transcript variant X3, mRNA phosphoinositide phosphatase SAC3(LOC100810079) coding protein psRNATarget
XM_014765447.1
ncRNA:20   UUUUAGUC-AAAAAAAUUUUU   1
  =|||||||-||||||||||||
targets:55   GAAAUCAGAUUUUUUUAAAAA   75

3.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC3 (LOC100810079), transcript variant X2, mRNA phosphoinositide phosphatase SAC3(LOC100810079) coding protein psRNATarget
XM_014765445.1
ncRNA:20   UUUUAGUC-AAAAAAAUUUUU   1
  =|||||||-||||||||||||
targets:55   GAAAUCAGAUUUUUUUAAAAA   75

3.0 PREDICTED: Glycine max phosphoinositide phosphatase SAC3 (LOC100810079), transcript variant X1, mRNA phosphoinositide phosphatase SAC3(LOC100810079) coding protein psRNATarget
AK244248.1
ncRNA:20   UUUUAGUC-AAAAAAAUUUUU   1
  =|||||||-||||||||||||
targets:61   GAAAUCAGAUUUUUUUAAAAA   81

3.0 Glycine max cDNA, clone: GMFL01-02-H24 NA coding protein psRNATarget
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