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BaseInfo

ncRNA ID novel_gma_miR3345
Species Glycine max
Class miRNA
Genome position Chr6:20776286-20776376 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 21
Mature sequence(if miRNA) 71 - CUUGGUGGAGUACUUAAGUGG - 91
Stem-loop(if miRNA) --       G            G     ---U    A   A    UAGU
  CUUGGUG AGUACUUAAGUG CUUGG    UCUU CCC UUGA    U
  ||||||| |||||||||||| |||||    |||| ||| ||||
  GGACUAU UCGUGGGUUCGU GAAUC    GGGA GGG AAUU    A
UU       -            -     CUUU    -   -    UUAG
Stem-loop sequence CUUGGUGGAGUACUUAAGUGGCUUGGUUCUUACCCAUUGAUAGUUAGAUUUUAAGGGAGGGUUUCCUAAGUGCUUGGGUGCUUAUCAGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098002.1
ncRNA:21   GGUGAAUUCAUGAGGUGGUUC   1
  *|||||*||*|||||||||||
targets:1298   GCACUUUAGAACUCCACCAAG   1318

2.5 Soybean clone JCVI-FLGm-22H2 unknown mRNA NA coding protein psRNATarget
XM_003538114.3
ncRNA:21   GGUGAAUUCAUGAGGUGGUUC   1
  **|*||==|||||||||||||
targets:478   GAAAUUGGGUACUCCACCAAG   498

3.0 PREDICTED: Glycine max aspartic proteinase-like protein 2 (LOC100811632), mRNA aspartic proteinase-like protein 2(LOC100811632) coding protein psRNATarget
XM_003551852.3
ncRNA:21   GGUGAAUUCAUGAGGUGGUUC   1
  *=*=||*||||||||||||||
targets:384   AUUUUUCAGUACUCCACCAAG   404

3.0 PREDICTED: Glycine max glucose-6-phosphate/phosphate translocator 1, chloroplastic-like (LOC100801832), mRNA glucose-6-phosphate/phosphate translocator 1, chloroplastic-like(LOC100801832) coding protein psRNATarget