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BaseInfo

ncRNA ID novel_gma_miR3344
Species Glycine max
Class miRNA
Genome position Chr6:41492153-41492242 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 21
Mature sequence(if miRNA) 1 - UUUUUGGUUGGUUGUGUUGAA - 21
Stem-loop(if miRNA) --      C    -      UCACUUCCCUCCCUUU         U
  CAACAC GCUA CCAAGA                GUUUCAGAU A
  |||||| |||| ||||||                ||||||||| G
  GUUGUG UGGU GGUUUU                UAAAGUUUA A
AA      U    U      --UUUUUUGUAAAAGU         C
Stem-loop sequence CAACACCGCUACCAAGAUCACUUCCCUCCCUUUGUUUCAGAUUAGACAUUUGAAAUUGAAAAUGUUUUUUUUUUGGUUGGUUGUGUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT098695.1
ncRNA:21   AAGUUGUGUUGGUUGGUUUUU   1
  |*||*||||||||||||||||
targets:87   UACAUCACAACCAACCAAAAA   107

1.0 Soybean clone JCVI-FLGm-23I8 unknown mRNA NA coding protein psRNATarget
XM_003547677.3
ncRNA:21   AAGUUGUGUUGGUUGGUUUUU   1
  **||||=*|||||||||||||
targets:249   AGCAACGGAACCAACCAAAAA   269

2.0 PREDICTED: Glycine max CASP-like protein 4A1 (LOC100818485), mRNA CASP-like protein 4A1(LOC100818485) coding protein psRNATarget
XM_006603842.2
ncRNA:21   AAGUUGUGUUGGUUGGUUUUU   1
  **||=||||||||*|||||||
targets:222   CACAGCACAACCACCCAAAAA   242

2.5 PREDICTED: Glycine max uncharacterized LOC102659957 (LOC102659957), mRNA uncharacterized LOC102659957(LOC102659957) coding protein psRNATarget