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BaseInfo

ncRNA ID novel_gma_miR3342
Species Glycine max
Class miRNA
Genome position Chr6:20019110-20019181 [+]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 1 - AGAGAGAGAAACCCUAGCAA - 20
Stem-loop(if miRNA) A      --   A C    -CAAAA  G    -   G
 GAGAGA  GAA C CUAG      AU UCGG CUG U
 ||||||  ||| | ||||      || |||| |||
 CUCUCU  CUU G GAUC      UA AGUU GGC C
G      UC   A A    ACGCCC  G    U   A
Stem-loop sequence AGAGAGAGAAACCCUAGCAAAAAUGUCGGCUGGUCACGGUUUGAGAUCCCGCACUAGAGAUUCCUUCUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779334.1
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ||||||||||||=||||||*
targets:4325   UUGCUAGGGUUUUUCUCUCC   4344

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100786934), transcript variant X4, mRNA TMV resistance protein N-like(LOC100786934) coding protein psRNATarget
XM_006585928.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ||||||||||||=||||||*
targets:4749   UUGCUAGGGUUUUUCUCUCC   4768

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100786934), transcript variant X3, mRNA TMV resistance protein N-like(LOC100786934) coding protein psRNATarget
XM_006585927.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ||||||||||||=||||||*
targets:4845   UUGCUAGGGUUUUUCUCUCC   4864

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100786934), transcript variant X2, mRNA TMV resistance protein N-like(LOC100786934) coding protein psRNATarget
XM_006585926.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ||||||||||||=||||||*
targets:4850   UUGCUAGGGUUUUUCUCUCC   4869

2.5 PREDICTED: Glycine max TMV resistance protein N-like (LOC100786934), transcript variant X1, mRNA TMV resistance protein N-like(LOC100786934) coding protein psRNATarget
XM_003528184.3
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  |*||||||||||*|||||||
targets:191   UAGCUAGGGUUUAUCUCUCU   210

2.5 PREDICTED: Glycine max uncharacterized LOC100807768 (LOC100807768), transcript variant X2, mRNA uncharacterized LOC100807768(LOC100807768) coding protein psRNATarget
XM_006578463.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  |*||||||||||*|||||||
targets:186   UAGCUAGGGUUUAUCUCUCU   205

2.5 PREDICTED: Glycine max serine/arginine repetitive matrix protein 2-like (LOC102668322), transcript variant X2, mRNA serine/arginine repetitive matrix protein 2-like(LOC102668322) coding protein psRNATarget
XM_014774713.1
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  |*||||||||||*|||||||
targets:187   UAGCUAGGGUUUAUCUCUCU   206

2.5 PREDICTED: Glycine max serine/arginine repetitive matrix protein 2-like (LOC102668322), transcript variant X1, mRNA serine/arginine repetitive matrix protein 2-like(LOC102668322) coding protein psRNATarget
NM_001255323.1
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  |**||=||||||||||||||
targets:37   UCCCUGGGGUUUCUCUCUCU   56

3.0 Glycine max putative glutamine amidotransferase YLR126C-like (LOC100808286), mRNA putative glutamine amidotransferase YLR126C-like(LOC100808286) coding protein psRNATarget
BT094593.1
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  |**||=||||||||||||||
targets:37   UCCCUGGGGUUUCUCUCUCU   56

3.0 Soybean clone JCVI-FLGm-18J20 unknown mRNA NA coding protein psRNATarget
AK245214.1
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ***=||||||||||||||||
targets:51   CCAUUAGGGUUUCUCUCUCU   70

3.0 Glycine max cDNA, clone: GMFL01-23-P08 NA coding protein psRNATarget
XM_003538822.3
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ***=||||||||||||||||
targets:94   CCAUUAGGGUUUCUCUCUCU   113

3.0 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 44-like (LOC100800608), mRNA zinc finger CCCH domain-containing protein 44-like(LOC100800608) coding protein psRNATarget
XM_006573506.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ***=||||||||||||||||
targets:105   CCAUUAGGGUUUCUCUCUCU   124

3.0 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 44 (LOC102667485), transcript variant X2, mRNA zinc finger CCCH domain-containing protein 44(LOC102667485) coding protein psRNATarget
XM_006573505.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  ***=||||||||||||||||
targets:104   CCAUUAGGGUUUCUCUCUCU   123

3.0 PREDICTED: Glycine max zinc finger CCCH domain-containing protein 44 (LOC102667485), transcript variant X1, mRNA zinc finger CCCH domain-containing protein 44(LOC102667485) coding protein psRNATarget
XM_003530859.3
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  **|=*|||||||||||||||
targets:786   GAGUCAGGGUUUCUCUCUCU   805

3.0 PREDICTED: Glycine max galactolipase DONGLE, chloroplastic-like (LOC100803183), mRNA galactolipase DONGLE, chloroplastic-like(LOC100803183) coding protein psRNATarget
XM_003551807.2
ncRNA:20   AACGAUCCCAAAGAGAGAGA   1
  **|=*|||||||||||||||
targets:834   GAGUCAGGGUUUCUCUCUCU   853

3.0 PREDICTED: Glycine max galactolipase DONGLE, chloroplastic-like (LOC100820494), mRNA galactolipase DONGLE, chloroplastic-like(LOC100820494) coding protein psRNATarget
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