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BaseInfo

ncRNA ID	novel_gma_miR3331
Species	Glycine max
Class	miRNA
Genome position	Chr11:4648185-4648283 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	1 - AAGAAAGGAAAGAAAAAAAA - 20
Stem-loop(if miRNA)	--           -     A     -   -UAC     UAAAAC    -  U   AAGAAAGGAAA GAAAA AAAAG AGA    AAAAG      AAGG CU A   ||||||||||| ||||| ||||| |||    |||||      |||| || U   UUUUUUCUUUU CUUUU UUUUC UCU    UUUUC      UUCU GG G AC           A     A     A   UGCA     --UACA    A  U
Stem-loop sequence	AAGAAAGGAAAGAAAAAAAAAGAGAUACAAAAGUAAAACAAGGCUUAUGUGGAUCUUACAUCUUUUACGUUCUACUUUUAUUUUCAUUUUCUUUUUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014776679.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||||||||| targets:12   UUUUUUUUCUUUCCUUUCUU   31 Target Full Sequence	0.0	PREDICTED: Glycine max IRK-interacting protein-like (LOC100818091), transcript variant X3, mRNA	IRK-interacting protein-like(LOC100818091)	coding protein	psRNATarget
XM_014776678.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||||||||| targets:12   UUUUUUUUCUUUCCUUUCUU   31 Target Full Sequence	0.0	PREDICTED: Glycine max IRK-interacting protein-like (LOC100818091), transcript variant X2, mRNA	IRK-interacting protein-like(LOC100818091)	coding protein	psRNATarget
XM_014776347.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||||||=|| targets:3320   UUUUUUUUCUUUCCUUUUUU   3339 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102670503 (LOC102670503), mRNA	uncharacterized LOC102670503(LOC102670503)	coding protein	psRNATarget
XM_006592317.2	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||=|||||| targets:238   UUUUUUUUCUUUCUUUUCUU   257 Target Full Sequence	1.5	PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X3, mRNA	homeobox-leucine zipper protein HDG2-like(LOC100782260)	coding protein	psRNATarget
XM_014764655.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||=|||||| targets:238   UUUUUUUUCUUUCUUUUCUU   257 Target Full Sequence	1.5	PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X4, mRNA	homeobox-leucine zipper protein HDG2-like(LOC100782260)	coding protein	psRNATarget
XM_003539824.3	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||=|||||| targets:239   UUUUUUUUCUUUCUUUUCUU   258 Target Full Sequence	1.5	PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X1, mRNA	homeobox-leucine zipper protein HDG2-like(LOC100782260)	coding protein	psRNATarget
XM_014764653.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||=|||||| targets:240   UUUUUUUUCUUUCUUUUCUU   259 Target Full Sequence	1.5	PREDICTED: Glycine max homeobox-leucine zipper protein HDG2-like (LOC100782260), transcript variant X2, mRNA	homeobox-leucine zipper protein HDG2-like(LOC100782260)	coding protein	psRNATarget
XM_006591282.2	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||| targets:2864   UUUUUUUUUUUUCCUUUCUU   2883 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100817502 (LOC100817502), transcript variant X1, mRNA	uncharacterized LOC100817502(LOC100817502)	coding protein	psRNATarget
XM_006591283.2	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||| targets:2762   UUUUUUUUUUUUCCUUUCUU   2781 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100817502 (LOC100817502), transcript variant X2, mRNA	uncharacterized LOC100817502(LOC100817502)	coding protein	psRNATarget
XM_003534151.3	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||| targets:170   UUUUUUUUUUUUCCUUUCUU   189 Target Full Sequence	1.5	PREDICTED: Glycine max protein CbxX, chromosomal (LOC100796476), transcript variant X1, mRNA	protein CbxX, chromosomal(LOC100796476)	coding protein	psRNATarget
XM_014763658.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   |||||||||||||=|||||| targets:1919   UUUUUUUUCUUUCUUUUCUU   1938 Target Full Sequence	1.5	PREDICTED: Glycine max protein terminal ear1-like (LOC100802212), mRNA	protein terminal ear1-like(LOC100802212)	coding protein	psRNATarget
XM_014762275.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||| targets:172   UUUUUUUUUUUUCCUUUCUU   191 Target Full Sequence	1.5	PREDICTED: Glycine max protein CbxX, chromosomal (LOC100796476), transcript variant X2, mRNA	protein CbxX, chromosomal(LOC100796476)	coding protein	psRNATarget
BT095677.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||| targets:53   UUUUUUUUUUUUCCUUUCUU   72 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-25C24 unknown mRNA	NA	coding protein	psRNATarget
XM_003517033.3	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   *||||||||||||=|||||| targets:218   GUUUUUUUCUUUCUUUUCUU   237 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100811742 (LOC100811742), mRNA	uncharacterized LOC100811742(LOC100811742)	coding protein	psRNATarget
XM_006586545.2	ncRNA:20   AAA-AAAAAGAAAGGAAAGAA   1   |||-||||||||||||||||| targets:85   UUUCUUUUUCUUUCCUUUCUU   105 Target Full Sequence	2.0	PREDICTED: Glycine max protein kinase (LOC100305450), transcript variant X1, mRNA	protein kinase(LOC100305450)	coding protein	psRNATarget
XM_006586546.2	ncRNA:20   AAA-AAAAAGAAAGGAAAGAA   1   |||-||||||||||||||||| targets:85   UUUCUUUUUCUUUCCUUUCUU   105 Target Full Sequence	2.0	PREDICTED: Glycine max protein kinase (LOC100305450), transcript variant X2, mRNA	protein kinase(LOC100305450)	coding protein	psRNATarget
XM_014764339.1	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||* targets:1165   UUUUUUUUUUUUCCUUUCUC   1184 Target Full Sequence	2.5	PREDICTED: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), transcript variant X1, mRNA	BAH and coiled-coil domain-containing protein 1-like(LOC100800993)	coding protein	psRNATarget
XM_006591822.2	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||* targets:1165   UUUUUUUUUUUUCCUUUCUC   1184 Target Full Sequence	2.5	PREDICTED: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), transcript variant X2, mRNA	BAH and coiled-coil domain-containing protein 1-like(LOC100800993)	coding protein	psRNATarget
XM_003546184.3	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||=||||||||||* targets:1117   UUUUUUUUUUUUCCUUUCUC   1136 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100794863 (LOC100794863), mRNA	uncharacterized LOC100794863(LOC100794863)	coding protein	psRNATarget
XM_003531021.3	ncRNA:20   AAAAAAAAGAAAGGAAAGAA   1   ||||||||||||=||||||* targets:1295   UUUUUUUUCUUUUCUUUCUG   1314 Target Full Sequence	2.5	PREDICTED: Glycine max protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like (LOC100798406), mRNA	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like(LOC100798406)	coding protein	psRNATarget