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BaseInfo

ncRNA ID novel_gma_miR3319
Species Glycine max
Class miRNA
Genome position Chr2:36285872-36286052 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 162 - AUGUUAAUUGUCUUUUAUUA - 181
Stem-loop(if miRNA) --               UAU          A           UACUU     CA   UGU             -AUU    U       A  AA
  AUGUUAAUUGUCUUU   UAAAUUUGUU AAAUUUUGGUA     CAUUU  CUU   UCUCCGAGUGCAU    UGAA GUGGUGG CG  G
  |||||||||||||||   |||||||||| |||||||||||     |||||  |||   |||||||||||||    |||| ||||||| ||
  UACAAUUAACAGAAA   AUUUAAACAA UUUAAAACCGU     GUAAA  GGA   AGGGGUUCAUGUA    ACUU CACCACC GU  A
UU               -UU          C           ----C     AC   UUC             CUCU    U       -  AC
Stem-loop sequence AUGUUAAUUGUCUUUUAUUAAAUUUGUUAAAAUUUUGGUAUACUUCAUUUCACUUUGUUCUCCGAGUGCAUAUUUGAAUGUGGUGGACGAAGACAUGCCACCACUUUCAUCUCAUGUACUUGGGGACUUAGGCAAAAUGCUGCCAAAAUUUCAACAAAUUUAUUAAAGACAAUUAACAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT099497.1
ncRNA:20   AUUAUUUUCUGUUAAUUGUA   1
  *|||*||||||||*||||||
targets:113   AAAUUAAAGACAACUAACAU   132

2.5 Soybean clone JCVI-FLGm-23P24 unknown mRNA NA coding protein psRNATarget