Search result

BaseInfo

ncRNA ID	novel_gma_miR3316
Species	Glycine max
Class	miRNA
Genome position	Chr11:13939659-13939783 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	106 - AAAUUAGACUAAAAUAUUUG - 125
Stem-loop(if miRNA)	-       ACU   A      ACCA      C   -     U    AA   U    UAAA     UCA  AAAUUAG   AAA UAUUUG    UUGUAA UAU GGGAU AGAU  ACU GAUA    GCAUU   U  |||||||   ||| ||||||    |||||| ||| ||||| ||||  ||| ||||    |||||  UUUGGUC   UUU GUGAAU    AACAUU AUA UCCUA UUUA  UGA UUAU    UGUAA   C C       -GU   A      ---A      -   G     C    -G   -    ----     CAA
Stem-loop sequence	AAAUUAGACUAAAAUAUUUGACCAUUGUAACUAUGGGAUUAGAUAAACUUGAUAUAAAGCAUUUCAUCAACAAUGUUAUUAGUGAUUUCAUCCUGAUAUUACAAAUAAGUGAUUUUGCUGGUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014772289.1	ncRNA:20   GUUUAUAAAAUCAGAUUAAA   1   *||||||||||||||||*|* targets:1538   AAAAUAUUUUAGUCUAAAUA   1557 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100776554 (LOC100776554), transcript variant X1, mRNA	uncharacterized LOC100776554(LOC100776554)	coding protein	psRNATarget
XM_014764633.1	ncRNA:20   GUUUAUAAAAUCAGAUUAAA   1   =|*|||||||||||*||||| targets:1238   UAUAUAUUUUAGUCAAAUUU   1257 Target Full Sequence	2.5	PREDICTED: Glycine max F-box/kelch-repeat protein SKIP6-like (LOC106795254), mRNA	F-box/kelch-repeat protein SKIP6-like(LOC106795254)	coding protein	psRNATarget
XM_006578110.2	ncRNA:20   GUUUAUAAAAUCAGAUUAAA   1   ==||*||||||||||||||* targets:1816   UGAAAAUUUUAGUCUAAUUC   1835 Target Full Sequence	3.0	PREDICTED: Glycine max protein TIFY 8-like (LOC100819293), transcript variant X2, mRNA	protein TIFY 8-like(LOC100819293)	coding protein	psRNATarget
XM_003522591.3	ncRNA:20   GUUUAUAAAAUCAGAUUAAA   1   ==||*||||||||||||||* targets:1819   UGAAAAUUUUAGUCUAAUUC   1838 Target Full Sequence	3.0	PREDICTED: Glycine max protein TIFY 8-like (LOC100819293), transcript variant X1, mRNA	protein TIFY 8-like(LOC100819293)	coding protein	psRNATarget