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BaseInfo

ncRNA ID novel_gma_miR3314
Species Glycine max
Class miRNA
Genome position Chr2:47665091-47665191 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 82 - UUUCAAUUUCGAUUUUUUUU - 101
Stem-loop(if miRNA) --U         -       U     G UA      UCU       ---  U
   UUCAAUUUC GAUUUUU UUUUU U  CUUUUC   UUUGGUU   UC A
   ||||||||| ||||||| ||||| |  ||||||   |||||||   || A
   AAGUUAAGG UUGGGGA AAAGA G  GAAGAG   AGGCCAA   AG A
GGU         G       U     G GG      CUC       ACA  U
Stem-loop sequence UUUCAAUUUCGAUUUUUUUUUUUGUUACUUUUCUCUUUUGGUUUCUAAAUGAACAAACCGGACUCGAGAAGGGGGAGAAAUAGGGGUUGGGAAUUGAAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583801.2
ncRNA:20   UUUUUUUUAGCUUUAACUUU   1
  *|||==||||||||||||||
targets:293   CAAAGGAAUCGAAAUUGAAA   312

2.0 PREDICTED: Glycine max uncharacterized LOC100793613 (LOC100793613), mRNA uncharacterized LOC100793613(LOC100793613) coding protein psRNATarget
AK245947.1
ncRNA:20   UUUUUUUUAGCUUUAACUUU   1
  |||=||||||||=|||||||
targets:1515   AAAGAAAAUCGAGAUUGAAA   1534

2.5 Glycine max cDNA, clone: GMFL01-46-N13 NA coding protein psRNATarget
XM_003544835.3
ncRNA:20   UUUUUUUUAGCUUUAACUUU   1
  |||=||||||||=|||||||
targets:1606   AAAGAAAAUCGAGAUUGAAA   1625

2.5 PREDICTED: Glycine max inositol 3-kinase-like (LOC100792029), mRNA inositol 3-kinase-like(LOC100792029) coding protein psRNATarget
XM_014763919.1
ncRNA:20   UUUUUUUUAGCUUUAACUUU   1
  ||||||||||*||||||||*
targets:418   AAAAAAAAUCUAAAUUGAAU   437

2.5 PREDICTED: Glycine max uncharacterized LOC102663817 (LOC102663817), transcript variant X4, mRNA uncharacterized LOC102663817(LOC102663817) coding protein psRNATarget
XM_014766993.1
ncRNA:20   UUUUUUUUAGCUUUAACUUU   1
  **||==||||||||||||||
targets:302   CUAAGGAAUCGAAAUUGAAA   321

3.0 PREDICTED: Glycine max uncharacterized LOC100811262 (LOC100811262), mRNA uncharacterized LOC100811262(LOC100811262) coding protein psRNATarget