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BaseInfo

ncRNA ID	novel_gma_miR3309
Species	Glycine max
Class	miRNA
Genome position	Chr20:29930381-29930482 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	83 - ACUAUAAAAGAUAGUAGGAG - 102
Stem-loop(if miRNA)	--       C    A  UA    AA       --AAA  GUAAAAUUAUAUA   CCUACUA CUUU AU  UAAG  UUGAAUG     AA             A   ||||||| |||| ||  ||||  |||||||     ||   GGAUGAU GAAA UA  AUUC  AAUUUAC     AU             A GA       A    A  UC    AA       ACAAA  AUGAAGGUUUCUG
Stem-loop sequence	CCUACUACCUUUAAUUAUAAGAAUUGAAUGAAAAAGUAAAAUUAUAUAAAGUCUUUGGAAGUAUAAAACACAUUUAAAACUUACUAUAAAAGAUAGUAGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001255645.2	ncRNA:20   GAGGAUGAUAGAAAAUAUCA   1   *|*|||*||||||||||||| targets:1550   AUACUAAUAUCUUUUAUAGU   1569 Target Full Sequence	2.0	Glycine max auxin transporter-like protein 1-like (LOC100792491), mRNA	auxin transporter-like protein 1-like(LOC100792491)	coding protein	psRNATarget
XM_006578557.2	ncRNA:20   GAGGAUGAUAGAAAAUAUCA   1   =||||*|||||||||||=|| targets:398   UUCCUCCUAUCUUUUAUGGU   417 Target Full Sequence	2.5	PREDICTED: Glycine max BURP domain-containing protein 9-like (LOC100786660), mRNA	BURP domain-containing protein 9-like(LOC100786660)	coding protein	psRNATarget
XM_006578557.2	ncRNA:20   GAGGAUGAUAGAAAAUAUCA   1   =||||*|||||||||||=|| targets:446   UUCCUCCUAUCUUUUAUGGU   465 Target Full Sequence	2.5	PREDICTED: Glycine max BURP domain-containing protein 9-like (LOC100786660), mRNA	BURP domain-containing protein 9-like(LOC100786660)	coding protein	psRNATarget
XM_006578557.2	ncRNA:20   GAGGAUGAUAGAAAAUAUCA   1   =||||*|||||||||||=|| targets:494   UUCCUCCUAUCUUUUAUGGU   513 Target Full Sequence	2.5	PREDICTED: Glycine max BURP domain-containing protein 9-like (LOC100786660), mRNA	BURP domain-containing protein 9-like(LOC100786660)	coding protein	psRNATarget
XM_006578557.2	ncRNA:20   GAGGAUGAUAGAAAAUAUCA   1   =||||*|||||||||||=|| targets:590   UUCCUCCUAUCUUUUAUGGU   609 Target Full Sequence	2.5	PREDICTED: Glycine max BURP domain-containing protein 9-like (LOC100786660), mRNA	BURP domain-containing protein 9-like(LOC100786660)	coding protein	psRNATarget