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BaseInfo

ncRNA ID novel_gma_miR3307
Species Glycine max
Class miRNA
Genome position Chr20:39885060-39885143 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672
Length 20
Mature sequence(if miRNA) 65 - UAGAAUUAGAGUUUUAUUUC - 84
Stem-loop(if miRNA) --                 UU  --AAAAU   CAUAA       
  UAGAAUUAGAGUUUUAU  CA       CUG     UAAAUGUU
  |||||||||||||||||  ||       |||     |||||||U
  GUCUUAAUCUUAAAGUG  GU       GAC     AUUUAUAU
UU                 UU  AACCCUU   -----       
Stem-loop sequence UAGAAUUAGAGUUUUAUUUCAAAAAUCUGCAUAAUAAAUGUUUUAUAUUUACAGUUCCCAAUGUUGUGAAAUUCUAAUUCUGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773701.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  |||=|=||||||||||||||
targets:1138   GAAGUGAAACUCUAAUUCUA   1157

2.0 PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100804317), transcript variant X1, mRNA UPF0481 protein At3g47200-like(LOC100804317) coding protein psRNATarget
XM_003534311.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  |||=|||||||||||||||=
targets:2017   GAAGUAAAACUCUAAUUCUG   2036

2.0 PREDICTED: Glycine max amidophosphoribosyltransferase, chloroplastic-like (LOC100791919), mRNA amidophosphoribosyltransferase, chloroplastic-like(LOC100791919) coding protein psRNATarget
XM_014771412.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  **||||*|||||||||||||
targets:2037   ACAAUAUAACUCUAAUUCUA   2056

2.0 PREDICTED: Glycine max uncharacterized LOC102659863 (LOC102659863), mRNA uncharacterized LOC102659863(LOC102659863) coding protein psRNATarget
XM_003520847.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  **||||*|||||||||||||
targets:1948   ACAAUAUAACUCUAAUUCUA   1967

2.0 PREDICTED: Glycine max uncharacterized LOC100785776 (LOC100785776), mRNA uncharacterized LOC100785776(LOC100785776) coding protein psRNATarget
XM_003522284.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  ||=||||||||||||||=||
targets:557   GAGAUAAAACUCUAAUUUUA   576

2.5 PREDICTED: Glycine max transcription factor PRE4-like (LOC100790746), mRNA transcription factor PRE4-like(LOC100790746) coding protein psRNATarget
XM_003528141.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  ||=||||||||||||||=||
targets:619   GAGAUAAAACUCUAAUUUUA   638

2.5 PREDICTED: Glycine max transcription factor ILI4-like (LOC100810266), mRNA transcription factor ILI4-like(LOC100810266) coding protein psRNATarget
BT099419.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  ||||||||||||*||||||=
targets:450   GAAAUAAAACUCCAAUUCUG   469

2.5 Soybean clone JCVI-FLGm-26P2 unknown mRNA NA coding protein psRNATarget
XM_014762020.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  ||==|||||||||||||||=
targets:340   GAGGUAAAACUCUAAUUCUG   359

3.0 PREDICTED: Glycine max uncharacterized LOC100778779 (LOC100778779), transcript variant X2, mRNA uncharacterized LOC100778779(LOC100778779) coding protein psRNATarget
BT093404.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  *|=||=|||||||||||||=
targets:588   AAGAUGAAACUCUAAUUCUG   607

3.0 Soybean clone JCVI-FLGm-24I11 unknown mRNA NA coding protein psRNATarget
EU019591.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  *|==|=||||||||||||||
targets:1110   AAGGUGAAACUCUAAUUCUA   1129

3.0 Glycine max transcription factor (WRKY62) mRNA, partial cds NA coding protein psRNATarget
AK245515.1
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  *|==|=||||||||||||||
targets:1906   AAGGUGAAACUCUAAUUCUA   1925

3.0 Glycine max cDNA, clone: GMFL01-32-M12 NA coding protein psRNATarget
XM_003551152.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  *|==|=||||||||||||||
targets:2011   AAGGUGAAACUCUAAUUCUA   2030

3.0 PREDICTED: Glycine max probable WRKY transcription factor 26 (LOC100127397), mRNA probable WRKY transcription factor 26(LOC100127397) coding protein psRNATarget
XM_003553708.3
ncRNA:20   CUUUAUUUUGAGAUUAAGAU   1
  *|==|||||||||||||||*
targets:1954   CAGGUAAAACUCUAAUUCUU   1973

3.0 PREDICTED: Glycine max uncharacterized LOC100781320 (LOC100781320), mRNA uncharacterized LOC100781320(LOC100781320) coding protein psRNATarget
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