Search result

BaseInfo

ncRNA ID	novel_gma_miR3303
Species	Glycine max
Class	miRNA
Genome position	Chr18:18324765-18324844 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	21
Mature sequence(if miRNA)	1 - UCAAUAGUUGAGAUUGUAAUU - 21
Stem-loop(if miRNA)	--     A       -    A  UA  UU      U     U   UCAAU GUUGAGA UUGU AU  AU  UAAGAU AUAUA A   ||||| ||||||| |||| ||  ||  |||||| |||||   AGUUA CAACUCU AAUA UA  UA  AUUUUA UAUAU U UU     C       U    C  --  UU      -     A
Stem-loop sequence	UCAAUAGUUGAGAUUGUAAUUAAUUUUAAGAUUAUAUAUAUAUAUAUAUUUUAUUAUAUCAUAAUUCUCAACCAUUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK285946.1	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:831   UUUUGGAAUCUCAACUAUUGG   851 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-19-A22	NA	coding protein	psRNATarget
XM_014775372.1	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:825   UUUUGGAAUCUCAACUAUUGG   845 Target Full Sequence	3.0	PREDICTED: Glycine max probable polyamine transporter At1g31830 (LOC100813355), transcript variant X3, mRNA	probable polyamine transporter At1g31830(LOC100813355)	coding protein	psRNATarget
XM_006587576.2	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:851   UUUUGGAAUCUCAACUAUUGG   871 Target Full Sequence	3.0	PREDICTED: Glycine max probable polyamine transporter At1g31830 (LOC100816567), transcript variant X1, mRNA	probable polyamine transporter At1g31830(LOC100816567)	coding protein	psRNATarget
XM_006573423.2	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:886   UUUUGGAAUCUCAACUAUUGG   906 Target Full Sequence	3.0	PREDICTED: Glycine max probable polyamine transporter At1g31830 (LOC100813355), transcript variant X1, mRNA	probable polyamine transporter At1g31830(LOC100813355)	coding protein	psRNATarget
XM_003534275.3	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:927   UUUUGGAAUCUCAACUAUUGG   947 Target Full Sequence	3.0	PREDICTED: Glycine max probable polyamine transporter At1g31830 (LOC100816567), transcript variant X2, mRNA	probable polyamine transporter At1g31830(LOC100816567)	coding protein	psRNATarget
XM_003517036.3	ncRNA:21   UUAAUGUUAGAGUUGAUAACU   1   **||=*||||||||||||||= targets:981   UUUUGGAAUCUCAACUAUUGG   1001 Target Full Sequence	3.0	PREDICTED: Glycine max probable polyamine transporter At1g31830 (LOC100813355), transcript variant X2, mRNA	probable polyamine transporter At1g31830(LOC100813355)	coding protein	psRNATarget