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BaseInfo

ncRNA ID novel_gma_miR3302
Species Glycine max
Class miRNA
Genome position Chr18:2700347-2700447 [-]
Reference genome Glycine_max_v2.0
Source SRR1451672;SRR1451674
Length 19
Mature sequence(if miRNA) 83 - UUUCUUUUUUGUUUGAAUU - 101
Stem-loop(if miRNA) ----UU    U    UU        ----------------------------U   UGUAUUACA
      UCUU UUUG  UGAAUUUG                             GUG         A
      |||| ||||  ||||||||                             |||
      AGAA GAAU  ACUUAAAC                             UAA         U
UGAAUU    U    -U        UAGCCUAUUCCAAACCUUUAAUCUAUAAA   AAAAAUUUU
Stem-loop sequence UUUCUUUUUUGUUUGAAUUUGUGUGUGUAUUACAAUUUUUAAAAAAAUAAAUAUCUAAUUUCCAAACCUUAUCCGAUCAAAUUCAUUAAGUAAGAUUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003530805.3
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  ||||||||*||||||||||
targets:2049   AAUUCAAAAAAAAAAGAAA   2067

1.5 PREDICTED: Glycine max uncharacterized LOC100817940 (LOC100817940), mRNA uncharacterized LOC100817940(LOC100817940) coding protein psRNATarget
XM_006581946.2
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:3105   AAUUCUAACAAAAAGGAAA   3123

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X1, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
XM_014776595.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:3096   AAUUCUAACAAAAAGGAAA   3114

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X2, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
XM_014776599.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:3104   AAUUCUAACAAAAAGGAAA   3122

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X6, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
XM_014776597.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:2961   AAUUCUAACAAAAAGGAAA   2979

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X4, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
XM_014776596.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:2923   AAUUCUAACAAAAAGGAAA   2941

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X3, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
XM_014776598.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*||||||||=||||
targets:2779   AAUUCUAACAAAAAGGAAA   2797

2.5 PREDICTED: Glycine max uncharacterized LOC100810428 (LOC100810428), transcript variant X5, mRNA uncharacterized LOC100810428(LOC100810428) coding protein psRNATarget
AK244879.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  ||||=||||||||||*|||
targets:852   AAUUUAAACAAAAAAAAAA   870

2.5 Glycine max cDNA, clone: GMFL01-15-O02 NA coding protein psRNATarget
XM_003550310.3
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  ||*||||||||||||||=|
targets:1848   AAAUCAAACAAAAAAGAGA   1866

2.5 PREDICTED: Glycine max uncharacterized LOC100780738 (LOC100780738), mRNA uncharacterized LOC100780738(LOC100780738) coding protein psRNATarget
XM_003544878.3
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||*|||||=|||||||
targets:2515   AAUUCCAACAAGAAAGAAA   2533

2.5 PREDICTED: Glycine max uncharacterized LOC100814556 (LOC100814556), transcript variant X1, mRNA uncharacterized LOC100814556(LOC100814556) coding protein psRNATarget
XM_014772576.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  =|||||||||*||||||||
targets:2589   GAUUCAAACAUAAAAGAAA   2607

2.5 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 8 (LOC100785282), transcript variant X2, mRNA cysteine-rich receptor-like protein kinase 8(LOC100785282) coding protein psRNATarget
XM_014772575.1
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  =|||||||||*||||||||
targets:2739   GAUUCAAACAUAAAAGAAA   2757

2.5 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 8 (LOC100785282), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 8(LOC100785282) coding protein psRNATarget
XM_006584620.2
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  ||||||||*|||||||||*
targets:239   AAUUCAAAAAAAAAAGAAU   257

2.5 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797893), transcript variant X1, mRNA protein MEI2-like 1(LOC100797893) coding protein psRNATarget
XM_006584621.2
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  ||||||||*|||||||||*
targets:239   AAUUCAAAAAAAAAAGAAU   257

2.5 PREDICTED: Glycine max protein MEI2-like 1 (LOC100797893), transcript variant X2, mRNA protein MEI2-like 1(LOC100797893) coding protein psRNATarget
XM_006572926.2
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  |||||||||||||||*||*
targets:432   AAUUCAAACAAAAAAUAAC   450

2.5 PREDICTED: Glycine max protein BRICK 1 (LOC100785557), transcript variant X2, mRNA protein BRICK 1(LOC100785557) coding protein psRNATarget
XM_003540779.3
ncRNA:19   UUAAGUUUGUUUUUUCUUU   1
  *||||||||||||||*|||
targets:201   CAUUCAAACAAAAAACAAA   219

2.5 PREDICTED: Glycine max uncharacterized LOC100792178 (LOC100792178), mRNA uncharacterized LOC100792178(LOC100792178) coding protein psRNATarget
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