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BaseInfo

ncRNA ID	novel_gma_miR3293
Species	Glycine max
Class	miRNA
Genome position	Chr18:2653307-2653483 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	158 - CAGUAUGAAUGUUUUUUCUC - 177
Stem-loop(if miRNA)	--                 -AUCUG   CUGCUGCUUUUACGUUCAAGAUGUUAUACAAGGGAAUUGCUAUUCUCCCCAACGUUAGAAA   GGAGGGAUAUUUAUGCU      GUG                                                             A   |||||||||||||||||      |||   CUUUUUUGUAAGUAUGA      UAU                                                             U CU                 CUAAAA   UAUUUAUAAAUAUGACUGCAAAUUUAAAUAUCGUUUUUUUUUUGAGUGUGUUACUUGUAGU
Stem-loop sequence	GGAGGGAUAUUUAUGCUAUCUGGUGCUGCUGCUUUUACGUUCAAGAUGUUAUACAAGGGAAUUGCUAUUCUCCCCAACGUUAGAAAAUUGAUGUUCAUUGUGUGAGUUUUUUUUUUGCUAUAAAUUUAAACGUCAGUAUAAAUAUUUAUUAUAAAAUCAGUAUGAAUGUUUUUUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003552911.3	ncRNA:20   CUCUU-UUUUGUAAGUAUGAC   1   *||||-||||||||||||||| targets:1891   CAGAAUAAAACAUUCAUACUG   1911 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0503 protein At3g09070, chloroplastic-like (LOC100782038), mRNA	UPF0503 protein At3g09070, chloroplastic-like(LOC100782038)	coding protein	psRNATarget
BT093546.1	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *||||||||||||||||=|* targets:918   AAGAAAAAACAUUCAUAUUA   937 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-17O10 unknown mRNA	NA	coding protein	psRNATarget
NM_001289246.1	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *||||||||||||||||=|* targets:1130   AAGAAAAAACAUUCAUAUUA   1149 Target Full Sequence	2.5	Glycine max uncharacterized LOC100794949 (LOC100794949), mRNA	uncharacterized LOC100794949(LOC100794949)	coding protein	psRNATarget
BT095450.1	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *||||||||||||||||=|* targets:1132   AAGAAAAAACAUUCAUAUUA   1151 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-19K12 unknown mRNA	NA	coding protein	psRNATarget
XM_006576652.2	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *|*||||||||||||||=|| targets:1068   AACAAAAAACAUUCAUAUUG   1087 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g06530-like (LOC102664920), mRNA	uncharacterized protein At3g06530-like(LOC102664920)	coding protein	psRNATarget
XM_006575613.2	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *|*||||||||||||||=|| targets:2972   AACAAAAAACAUUCAUAUUG   2991 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g06530-like (LOC100798087), transcript variant X2, mRNA	uncharacterized protein At3g06530-like(LOC100798087)	coding protein	psRNATarget
XM_003518475.3	ncRNA:20   CUCUUUUUUGUAAGUAUGAC   1   *|*||||||||||||||=|| targets:2971   AACAAAAAACAUUCAUAUUG   2990 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized protein At3g06530-like (LOC100798087), transcript variant X1, mRNA	uncharacterized protein At3g06530-like(LOC100798087)	coding protein	psRNATarget
XM_006594377.2	ncRNA:20   CUCUU-UUUUGUAAGUAUGAC   1   |||||-||||||||||||||* targets:2420   GAGAAGAAAACAUUCAUACUU   2440 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100815064 (LOC100815064), mRNA	uncharacterized LOC100815064(LOC100815064)	coding protein	psRNATarget
XM_003547186.3	ncRNA:20   CUCUU-UUUUGUAAGUAUGAC   1   |||||-||||||||||||||* targets:2528   GAGAAGAAAACAUUCAUACUU   2548 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100782145 (LOC100782145), mRNA	uncharacterized LOC100782145(LOC100782145)	coding protein	psRNATarget