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BaseInfo

ncRNA ID	novel_gma_miR3280
Species	Glycine max
Class	miRNA
Genome position	Chr15:22688578-22688714 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	118 - AAUUGAAGAGAAAAAAGAGA - 137
Stem-loop(if miRNA)	UCUUUUCUUCUUCAUUUG          ------CU   - UU   ---U    ----UC         CUCUUCCUAUUCA                   CUUUUUUCUC        CCA C  UGU    UUCC      UGAUUUUUU             A                   ||||||||||        ||| |  |||    ||||      |||||||||                   GAAAAAAGAG        GGU G  ACA    AAGG      ACUAAAAAA             A ---------------AGA          AAGUUAAU   A UU   UAGU    CCCAAA         AAAAAAAAACACA
Stem-loop sequence	UCUUUUCUUCUUCAUUUGCUUUUUUCUCCUCCACUUUGUUUUCCUCUGAUUUUUUCUCUUCCUAUUCAAAACACAAAAAAAAAAAAAAAUCAAAACCCGGAAUGAUACAUUGAUGGUAAUUGAAGAGAAAAAAGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003521925.3	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||||*|||||||||||||| targets:263   CCUCUAUUUUCUCUUCAAUU   282 Target Full Sequence	1.0	PREDICTED: Glycine max cytochrome P450 83B1-like (LOC100801312), mRNA	cytochrome P450 83B1-like(LOC100801312)	coding protein	psRNATarget
XM_003521923.3	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||||*|||||||||||||| targets:247   CCUCUAUUUUCUCUUCAAUU   266 Target Full Sequence	1.0	PREDICTED: Glycine max cytochrome P450 71A1-like (LOC100800236), mRNA	cytochrome P450 71A1-like(LOC100800236)	coding protein	psRNATarget
XM_003518976.3	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||=||||||=||||||||| targets:359   CCUUUUUUUUUUCUUCAAUU   378 Target Full Sequence	2.5	PREDICTED: Glycine max myosin-binding protein 7 (LOC100806435), transcript variant X1, mRNA	myosin-binding protein 7(LOC100806435)	coding protein	psRNATarget
XM_014767746.1	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||=||||||=||||||||| targets:361   CCUUUUUUUUUUCUUCAAUU   380 Target Full Sequence	2.5	PREDICTED: Glycine max myosin-binding protein 7 (LOC100806435), transcript variant X3, mRNA	myosin-binding protein 7(LOC100806435)	coding protein	psRNATarget
XM_014767744.1	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||=||||||=||||||||| targets:361   CCUUUUUUUUUUCUUCAAUU   380 Target Full Sequence	2.5	PREDICTED: Glycine max myosin-binding protein 7 (LOC100806435), transcript variant X2, mRNA	myosin-binding protein 7(LOC100806435)	coding protein	psRNATarget
AK244258.1	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||=||||||=||||||||| targets:302   CCUUUUUUUUUUCUUCAAUU   321 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-02-I10	NA	coding protein	psRNATarget
XM_006591672.2	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   *||=||||||=||||||||| targets:122   ACUUUUUUUUUUCUUCAAUU   141 Target Full Sequence	2.5	PREDICTED: Glycine max isoleucine N-monooxygenase 1-like (LOC100787378), mRNA	isoleucine N-monooxygenase 1-like(LOC100787378)	coding protein	psRNATarget
XM_003518040.3	ncRNA:20   AGAGAAAAAAGAGAAGUUAA   1   |=|||||||||||*|||||| targets:1250   UUUCUUUUUUCUCCUCAAUU   1269 Target Full Sequence	2.5	PREDICTED: Glycine max GDSL esterase/lipase At2g23540 (LOC100784147), mRNA	GDSL esterase/lipase At2g23540(LOC100784147)	coding protein	psRNATarget