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BaseInfo

ncRNA ID	novel_gma_miR3279
Species	Glycine max
Class	miRNA
Genome position	Chr14:30920433-30920583 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	132 - AACGUUCCAAGCUCUUUCUC - 151
Stem-loop(if miRNA)	---     U UC        G  C    ------------------CUUCUGUUCCC     CAUUUCUCAUUUGAGCGUUUCAGC    GAAGA G  UGGAGUGU UG GAAG                             GAGAG                        C    ||||| |  |||||||| || ||||                             |||||                        U    UUUCU C  ACCUUGCA AC CUUU                             ACCGC                        U CUC     - GA        -  -    ACCAAAACCUACUUUCUUUCUUCUUCUUU     AAAAAGGAUUCGAUGUGCUUUCGU
Stem-loop sequence	GAAGAUGUCUGGAGUGUGUGCGAAGCUUCUGUUCCCGAGAGCAUUUCUCAUUUGAGCGUUUCAGCCUUUGCUUUCGUGUAGCUUAGGAAAAACGCCAUUUCUUCUUCUUUCUUUCAUCCAAAACCAUUUCCAACGUUCCAAGCUCUUUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014774261.1	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *||=||||||||||||||*| targets:264   AAGGAAGAGCUUGGAACGGU   283 Target Full Sequence	2.5	PREDICTED: Glycine max ABC transporter C family member 4-like (LOC106798270), mRNA	ABC transporter C family member 4-like(LOC106798270)	coding protein	psRNATarget
NM_001255619.2	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:220   AAGAAAAAGCUUGGAUCGUU   239 Target Full Sequence	2.5	Glycine max patellin-3-like (LOC100798374), mRNA	patellin-3-like(LOC100798374)	coding protein	psRNATarget
BT093413.1	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:222   AAGAAAAAGCUUGGAUCGUU   241 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-17C6 unknown mRNA	NA	coding protein	psRNATarget
XM_006577852.2	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:318   AAGAAAAAGCUUGGAUCGUU   337 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH3-like (LOC100802579), transcript variant X2, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH3-like(LOC100802579)	coding protein	psRNATarget
XM_006580952.2	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:351   AAGAAAAAGCUUGGAUCGUU   370 Target Full Sequence	2.5	PREDICTED: Glycine max patellin-3-like (LOC100798374), transcript variant X1, mRNA	patellin-3-like(LOC100798374)	coding protein	psRNATarget
XM_014774399.1	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:322   AAGAAAAAGCUUGGAUCGUU   341 Target Full Sequence	2.5	PREDICTED: Glycine max phosphatidylinositol/phosphatidylcholine transfer protein SFH3-like (LOC100802579), transcript variant X1, mRNA	phosphatidylinositol/phosphatidylcholine transfer protein SFH3-like(LOC100802579)	coding protein	psRNATarget
XM_006580953.2	ncRNA:20   CUCUUUCUCGAACCUUGCAA   1   *|||||*||||||||*|||| targets:452   AAGAAAAAGCUUGGAUCGUU   471 Target Full Sequence	2.5	PREDICTED: Glycine max patellin-3-like (LOC100798374), transcript variant X2, mRNA	patellin-3-like(LOC100798374)	coding protein	psRNATarget