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BaseInfo

ncRNA ID	novel_gma_miR3276
Species	Glycine max
Class	miRNA
Genome position	Chr14:6068209-6068358 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451672
Length	20
Mature sequence(if miRNA)	131 - UGGUUUUUAUUUUAUUUUAU - 150
Stem-loop(if miRNA)	---U              UUUAUUUUUUACU   -   A      AA    GAGGUUGUAAUAAUUUAAUUAAGAAUGUAGUU     GGUUUUUAUUUUAU             UCA GGG UCAUUU  AAAA                                A     ||||||||||||||             ||| ||| ||||||  ||||                                A     UCAAAGAUGAGAUA             AGU CCC GGUGGA  CUGU                                U UUAG              -------------   A   -      -A    GUACACUAGCUGUUGUUAUUUUUUUUAUUUAG
Stem-loop sequence	UGGUUUUUAUUUUAUUUUAUUUUUUACUUCAGGGAUCAUUUAAAAAAGAGGUUGUAAUAAUUUAAUUAAGAAUGUAGUUAAUGAUUUAUUUUUUUUAUUGUUGUCGAUCACAUGUGUCAAGGUGGCCCAUGAAUAGAGUAGAAACUGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006589529.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |||||=|||||||||||||| targets:367   AUAAAGUAAAAUAAAAACCA   386 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100776509 (LOC100776509), transcript variant X1, mRNA	uncharacterized LOC100776509(LOC100776509)	coding protein	psRNATarget
XM_003536479.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |||||=|||||||||||||| targets:368   AUAAAGUAAAAUAAAAACCA   387 Target Full Sequence	1.0	PREDICTED: Glycine max uncharacterized LOC100776509 (LOC100776509), transcript variant X2, mRNA	uncharacterized LOC100776509(LOC100776509)	coding protein	psRNATarget
XM_003519555.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |*|||||||||||||||||| targets:81   AAAAAAUAAAAUAAAAACCA   100 Target Full Sequence	1.0	PREDICTED: Glycine max cell division protein FtsZ homolog 1, chloroplastic-like (LOC100808722), mRNA	cell division protein FtsZ homolog 1, chloroplastic-like(LOC100808722)	coding protein	psRNATarget
BT093002.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |||||||||||||||||=|| targets:150   AUAAAAUAAAAUAAAAAUCA   169 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-16N20 unknown mRNA	NA	coding protein	psRNATarget
BT095153.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |||||||||||||||||=|| targets:258   AUAAAAUAAAAUAAAAAUCA   277 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-6H22 unknown mRNA	NA	coding protein	psRNATarget
XM_003533833.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||||||||||||*||| targets:225   AUAAAAUAAAAUAAAAUCCA   244 Target Full Sequence	1.5	PREDICTED: Glycine max putative glycerol-3-phosphate transporter 5 (LOC100804097), mRNA	putative glycerol-3-phosphate transporter 5(LOC100804097)	coding protein	psRNATarget
XM_014778155.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||||||||||||||*| targets:27   UUAAAAUAAAAUAAAAACAA   46 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100778186 (LOC100778186), transcript variant X1, mRNA	uncharacterized LOC100778186(LOC100778186)	coding protein	psRNATarget
XM_014778156.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||||||||||||||*| targets:5   UUAAAAUAAAAUAAAAACAA   24 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100778186 (LOC100778186), transcript variant X2, mRNA	uncharacterized LOC100778186(LOC100778186)	coding protein	psRNATarget
XM_006601812.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||||||||||||||=* targets:364   AUAAAAUAAAAUAAAAACUU   383 Target Full Sequence	2.5	PREDICTED: Glycine max purple acid phosphatase 15-like (LOC100784006), transcript variant X1, mRNA	purple acid phosphatase 15-like(LOC100784006)	coding protein	psRNATarget
XM_006601813.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||||||||||||||=* targets:362   AUAAAAUAAAAUAAAAACUU   381 Target Full Sequence	2.5	PREDICTED: Glycine max purple acid phosphatase 15-like (LOC100784006), transcript variant X2, mRNA	purple acid phosphatase 15-like(LOC100784006)	coding protein	psRNATarget
XM_014770851.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||*||||||||||=|| targets:138   AUAAAAAAAAAUAAAAAUCA   157 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807316 (LOC100807316), transcript variant X8, mRNA	uncharacterized LOC100807316(LOC100807316)	coding protein	psRNATarget
XM_006602484.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||*||||||||||=|| targets:140   AUAAAAAAAAAUAAAAAUCA   159 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807316 (LOC100807316), transcript variant X7, mRNA	uncharacterized LOC100807316(LOC100807316)	coding protein	psRNATarget
XM_006602480.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||*||||||||||=|| targets:139   AUAAAAAAAAAUAAAAAUCA   158 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807316 (LOC100807316), transcript variant X1, mRNA	uncharacterized LOC100807316(LOC100807316)	coding protein	psRNATarget
XM_006602479.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||*||||||||||=|| targets:139   AUAAAAAAAAAUAAAAAUCA   158 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807316 (LOC100807316), transcript variant X5, mRNA	uncharacterized LOC100807316(LOC100807316)	coding protein	psRNATarget
XM_006586619.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |*|||||||||||=|||||| targets:210   AAAAAAUAAAAUAGAAACCA   229 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100790513 (LOC100790513), transcript variant X1, mRNA	uncharacterized LOC100790513(LOC100790513)	coding protein	psRNATarget
XM_006602478.2	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||*||||||||||=|| targets:139   AUAAAAAAAAAUAAAAAUCA   158 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100807316 (LOC100807316), transcript variant X2, mRNA	uncharacterized LOC100807316(LOC100807316)	coding protein	psRNATarget
XM_003528799.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |*||||||||||||||=||| targets:31   AAAAAAUAAAAUAAAAGCCA   50 Target Full Sequence	2.5	PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100793092), mRNA	ATP-dependent helicase BRM-like(LOC100793092)	coding protein	psRNATarget
XM_003528043.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   ||||||||||||*||||||* targets:23   AUAAAAUAAAAUCAAAACCC   42 Target Full Sequence	2.5	PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 36a-like (LOC100788688), mRNA	mediator of RNA polymerase II transcription subunit 36a-like(LOC100788688)	coding protein	psRNATarget
BT099069.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||||||||||||||** targets:145   UUAAAAUAAAAUAAAAACAU   164 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-13M20 unknown mRNA	NA	coding protein	psRNATarget
XM_014771203.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||*||||||||||=|| targets:467   CUAAAAAAAAAUAAAAAUCA   486 Target Full Sequence	2.5	PREDICTED: Glycine max B3 domain-containing transcription factor ABI3-like (LOC100810343), transcript variant X3, mRNA	B3 domain-containing transcription factor ABI3-like(LOC100810343)	coding protein	psRNATarget
XM_014771202.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||*||||||||||=|| targets:446   CUAAAAAAAAAUAAAAAUCA   465 Target Full Sequence	2.5	PREDICTED: Glycine max B3 domain-containing transcription factor ABI3-like (LOC100810343), transcript variant X1, mRNA	B3 domain-containing transcription factor ABI3-like(LOC100810343)	coding protein	psRNATarget
XM_003552106.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   *|||||*||||||||||=|| targets:467   CUAAAAAAAAAUAAAAAUCA   486 Target Full Sequence	2.5	PREDICTED: Glycine max B3 domain-containing transcription factor ABI3-like (LOC100810343), transcript variant X2, mRNA	B3 domain-containing transcription factor ABI3-like(LOC100810343)	coding protein	psRNATarget
XM_003553866.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |*|||||||||||||||*|| targets:590   AAAAAAUAAAAUAAAAAACA   609 Target Full Sequence	2.5	PREDICTED: Glycine max mitochondrial pyruvate carrier 1-like (LOC106794112), transcript variant X1, mRNA	mitochondrial pyruvate carrier 1-like(LOC106794112)	coding protein	psRNATarget
XM_003542729.3	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |*|||||||||||||||*|| targets:7   AAAAAAUAAAAUAAAAAACA   26 Target Full Sequence	2.5	PREDICTED: Glycine max protein SAD1/UNC-84 domain protein 1-like (LOC100796587), mRNA	protein SAD1/UNC-84 domain protein 1-like(LOC100796587)	coding protein	psRNATarget
XM_014763472.1	ncRNA:20   UAUUUUAUUUUAUUUUUGGU   1   |||*||||||||||||||*| targets:123   AUAUAAUAAAAUAAAAACAA   142 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100306003 (LOC100306003), transcript variant X1, mRNA	uncharacterized LOC100306003(LOC100306003)	coding protein	psRNATarget
XM_014764198.1	ncRNA:20   UAUUUUAUUUUAUUUUUG-GU   1   *|||||||||||||||||-|| targets:38   CUAAAAUAAAAUAAAAACUCA   58 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC106794204 (LOC106794204), transcript variant X1, mRNA	uncharacterized LOC106794204(LOC106794204)	coding protein	psRNATarget
XM_003539849.3	ncRNA:20   UAUUUUAUUUUAUUUUUG-GU   1   *|||||||||||||||||-|| targets:18   UUAAAAUAAAAUAAAAACACA   38 Target Full Sequence	3.0	PREDICTED: Glycine max protein ULTRAPETALA 1-like (LOC100796203), mRNA	protein ULTRAPETALA 1-like(LOC100796203)	coding protein	psRNATarget
XM_003531186.3	ncRNA:20   UAUUUUAUUUU-AUUUUUGGU   1   *||||||||||-||||||||| targets:186   UUAAAAUAAAAAUAAAAACCA   206 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/kelch-repeat protein At1g55270 (LOC100796811), mRNA	F-box/kelch-repeat protein At1g55270(LOC100796811)	coding protein	psRNATarget
XM_003553431.3	ncRNA:20   UAUUUUAUUUU-AUUUUUGGU   1   *||||||||||-||||||||| targets:262   UUAAAAUAAAAAUAAAAACCA   282 Target Full Sequence	3.0	PREDICTED: Glycine max F-box/LRR-repeat protein 17-like (LOC100792669), mRNA	F-box/LRR-repeat protein 17-like(LOC100792669)	coding protein	psRNATarget