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BaseInfo

ncRNA ID novel_gma_miR3261
Species Glycine max
Class miRNA
Genome position Chr10:43912719-43912759 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670;SRR1451672
Length 20
Mature sequence(if miRNA) 1 - GCUGAUUUCAGAGUGUUGGG - 20
Stem-loop(if miRNA) --G    -U   A    G   G
   CUGA  UUC GAGU UUG G
   ||||  ||| |||| |||
   GACU  GAG CUCA AAC A
UGG    UU   -    -   G
Stem-loop sequence GCUGAUUUCAGAGUGUUGGGAGCAAACUCGAGUUUCAGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589230.2
ncRNA:20   GGGUUGUGAGACUUUAGUCG   1
  =||||==||||||||||||*
targets:1185   UCCAAUGCUCUGAAAUCAGA   1204

3.0 PREDICTED: Glycine max WAT1-related protein At5g07050 (LOC100527877), transcript variant X3, mRNA WAT1-related protein At5g07050(LOC100527877) coding protein psRNATarget
XM_014763269.1
ncRNA:20   GGGUUGUGAGACUUUAGUCG   1
  =||||==||||||||||||*
targets:1381   UCCAAUGCUCUGAAAUCAGA   1400

3.0 PREDICTED: Glycine max WAT1-related protein At5g07050 (LOC100527877), transcript variant X2, mRNA WAT1-related protein At5g07050(LOC100527877) coding protein psRNATarget
XM_003536200.3
ncRNA:20   GGGUUGUGAGACUUUAGUCG   1
  =||||==||||||||||||*
targets:1498   UCCAAUGCUCUGAAAUCAGA   1517

3.0 PREDICTED: Glycine max WAT1-related protein At5g07050 (LOC100527877), transcript variant X1, mRNA WAT1-related protein At5g07050(LOC100527877) coding protein psRNATarget