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BaseInfo

ncRNA ID novel_gma_miR3249
Species Glycine max
Class miRNA
Genome position Chr8:12602911-12602965 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 36 - ACACACACAUAUAUAUACAA - 55
Stem-loop(if miRNA) --UC                       
    AUAUAUGUGUGUGUGUGUGUGUGA
    |||||||||||||||||||||||C
    UAUAUAUACACACACACACACACA
AACA                       
Stem-loop sequence UCAUAUAUGUGUGUGUGUGUGUGUGACACACACACACACACACAUAUAUAUACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516494.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||||||||
targets:1744   GUGUAUAUAUAUGUGUGUGU   1763

0.0 PREDICTED: Glycine max spartin-like (LOC100804971), mRNA spartin-like(LOC100804971) coding protein psRNATarget
XM_003544783.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||||=|||||||||||||||
targets:1172   UUGUGUAUAUAUGUGUGUGU   1191

1.0 PREDICTED: Glycine max uncharacterized LOC100808486 (LOC100808486), mRNA uncharacterized LOC100808486(LOC100808486) coding protein psRNATarget
XM_003555700.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||*|||||||||||||||||
targets:91   UUAUAUAUAUAUGUGUGUGU   110

1.0 PREDICTED: Glycine max acid phosphatase 1-like (LOC100781343), mRNA acid phosphatase 1-like(LOC100781343) coding protein psRNATarget
XM_014778066.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:3150   AUAUAUAUAUAUGUGUGUGU   3169

1.0 PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X3, mRNA uncharacterized LOC100803516(LOC100803516) coding protein psRNATarget
XM_014778064.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:2916   AUAUAUAUAUAUGUGUGUGU   2935

1.0 PREDICTED: Glycine max uncharacterized LOC100803516 (LOC100803516), transcript variant X1, mRNA uncharacterized LOC100803516(LOC100803516) coding protein psRNATarget
XM_006578039.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:577   AUAUAUAUAUAUGUGUGUGU   596

1.0 PREDICTED: Glycine max uncharacterized LOC100807358 (LOC100807358), transcript variant X1, mRNA uncharacterized LOC100807358(LOC100807358) coding protein psRNATarget
XM_006573136.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:4   AUAUAUAUAUAUGUGUGUGU   23

1.0 PREDICTED: Glycine max uridine-cytidine kinase C-like (LOC100797542), transcript variant X3, mRNA uridine-cytidine kinase C-like(LOC100797542) coding protein psRNATarget
XM_006588753.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:23   AUAUAUAUAUAUGUGUGUGU   42

1.0 PREDICTED: Glycine max uncharacterized LOC100804666 (LOC100804666), transcript variant X2, mRNA uncharacterized LOC100804666(LOC100804666) coding protein psRNATarget
XM_003533005.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:31   CUAUAUAUAUAUGUGUGUGU   50

1.0 PREDICTED: Glycine max uncharacterized LOC100792068 (LOC100792068), mRNA uncharacterized LOC100792068(LOC100792068) coding protein psRNATarget
XM_006602975.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1708   AUAUAUAUAUAUGUGUGUGU   1727

1.0 PREDICTED: Glycine max dof zinc finger protein DOF2.4-like (LOC102662809), mRNA dof zinc finger protein DOF2.4-like(LOC102662809) coding protein psRNATarget
XM_003540201.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:73   AUAUAUAUAUAUGUGUGUGU   92

1.0 PREDICTED: Glycine max glucan endo-1,3-beta-glucosidase 14-like (LOC100811467), transcript variant X2, mRNA glucan endo-1,3-beta-glucosidase 14-like(LOC100811467) coding protein psRNATarget
XM_003524212.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1497   AUAUAUAUAUAUGUGUGUGU   1516

1.0 PREDICTED: Glycine max monoacylglycerol lipase ABHD6 (LOC100797816), mRNA monoacylglycerol lipase ABHD6(LOC100797816) coding protein psRNATarget
XM_006585307.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1450   AUAUAUAUAUAUGUGUGUGU   1469

1.0 PREDICTED: Glycine max DAR GTPase 2, mitochondrial (LOC100781630), transcript variant X1, mRNA DAR GTPase 2, mitochondrial(LOC100781630) coding protein psRNATarget
XM_014772026.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1270   AUAUAUAUAUAUGUGUGUGU   1289

1.0 PREDICTED: Glycine max GDSL esterase/lipase At5g33370-like (LOC100775450), mRNA GDSL esterase/lipase At5g33370-like(LOC100775450) coding protein psRNATarget
XM_014779005.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1373   AUAUAUAUAUAUGUGUGUGU   1392

1.0 PREDICTED: Glycine max DAR GTPase 2, mitochondrial (LOC100781630), transcript variant X2, mRNA DAR GTPase 2, mitochondrial(LOC100781630) coding protein psRNATarget
XM_003537420.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:270   AUAUAUAUAUAUGUGUGUGU   289

1.0 PREDICTED: Glycine max tropinone reductase homolog At5g06060-like (LOC100791265), mRNA tropinone reductase homolog At5g06060-like(LOC100791265) coding protein psRNATarget
AK287000.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1239   AUAUAUAUAUAUGUGUGUGU   1258

1.0 Glycine max cDNA, clone: GMFL01-41-M08 NA coding protein psRNATarget
XM_003520400.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1222   AUAUAUAUAUAUGUGUGUGU   1241

1.0 PREDICTED: Glycine max MATH domain and coiled-coil domain-containing protein At3g58370-like (LOC100809118), transcript variant X2, mRNA MATH domain and coiled-coil domain-containing protein At3g58370-like(LOC100809118) coding protein psRNATarget
XM_014773706.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1205   AUAUAUAUAUAUGUGUGUGU   1224

1.0 PREDICTED: Glycine max MATH domain and coiled-coil domain-containing protein At3g58370-like (LOC100809118), transcript variant X3, mRNA MATH domain and coiled-coil domain-containing protein At3g58370-like(LOC100809118) coding protein psRNATarget
XM_014773705.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1198   AUAUAUAUAUAUGUGUGUGU   1217

1.0 PREDICTED: Glycine max MATH domain and coiled-coil domain-containing protein At3g58370-like (LOC100809118), transcript variant X1, mRNA MATH domain and coiled-coil domain-containing protein At3g58370-like(LOC100809118) coding protein psRNATarget
XM_003547672.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1130   AUAUAUAUAUAUGUGUGUGU   1149

1.0 PREDICTED: Glycine max probable inactive 2-oxoglutarate-dependent dioxygenase AOP2 (LOC100815288), mRNA probable inactive 2-oxoglutarate-dependent dioxygenase AOP2(LOC100815288) coding protein psRNATarget
AK244006.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1132   AUAUAUAUAUAUGUGUGUGU   1151

1.0 Glycine max cDNA, clone: GMFL01-01-N12 NA coding protein psRNATarget
XM_003548559.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:1048   AUAUAUAUAUAUGUGUGUGU   1067

1.0 PREDICTED: Glycine max uncharacterized LOC100783418 (LOC100783418), mRNA uncharacterized LOC100783418(LOC100783418) coding protein psRNATarget
XM_006599484.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:855   AUAUAUAUAUAUGUGUGUGU   874

1.0 PREDICTED: Glycine max uncharacterized LOC100801079 (LOC100801079), transcript variant X1, mRNA uncharacterized LOC100801079(LOC100801079) coding protein psRNATarget
XM_003548976.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:849   AUAUAUAUAUAUGUGUGUGU   868

1.0 PREDICTED: Glycine max uncharacterized LOC100801079 (LOC100801079), transcript variant X2, mRNA uncharacterized LOC100801079(LOC100801079) coding protein psRNATarget
XM_003530966.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:537   AUAUAUAUAUAUGUGUGUGU   556

1.0 PREDICTED: Glycine max costars family protein-like (LOC100813695), mRNA costars family protein-like(LOC100813695) coding protein psRNATarget
XM_003531461.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:490   AUAUAUAUAUAUGUGUGUGU   509

1.0 PREDICTED: Glycine max cysteine-rich and transmembrane domain-containing protein A (LOC100306237), mRNA cysteine-rich and transmembrane domain-containing protein A(LOC100306237) coding protein psRNATarget
BT090256.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*|||||||||||||||||
targets:379   AUAUAUAUAUAUGUGUGUGU   398

1.0 Soybean clone JCVI-FLGm-4C19 unknown mRNA NA coding protein psRNATarget
XM_003535717.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||||||||||||||||||*|
targets:1792   UUGUAUAUAUAUGUGUGUAU   1811

1.5 PREDICTED: Glycine max sugar transport protein 10-like (LOC100807308), mRNA sugar transport protein 10-like(LOC100807308) coding protein psRNATarget
AK245774.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||||*|||
targets:3418   AUGUAUAUAUAUGUGUAUGU   3437

1.5 Glycine max cDNA, clone: GMFL01-41-A09 NA coding protein psRNATarget
XM_014775774.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||||*|||
targets:2330   AUGUAUAUAUAUGUGUAUGU   2349

1.5 PREDICTED: Glycine max neutral/alkaline invertase 3, chloroplastic (LOC100813457), transcript variant X3, mRNA neutral/alkaline invertase 3, chloroplastic(LOC100813457) coding protein psRNATarget
XM_014775773.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||||*|||
targets:2328   AUGUAUAUAUAUGUGUAUGU   2347

1.5 PREDICTED: Glycine max neutral/alkaline invertase 3, chloroplastic (LOC100813457), transcript variant X2, mRNA neutral/alkaline invertase 3, chloroplastic(LOC100813457) coding protein psRNATarget
XM_006580251.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||||*|||
targets:2304   AUGUAUAUAUAUGUGUAUGU   2323

1.5 PREDICTED: Glycine max neutral/alkaline invertase 3, chloroplastic (LOC100813457), transcript variant X1, mRNA neutral/alkaline invertase 3, chloroplastic(LOC100813457) coding protein psRNATarget
XM_003528041.3
ncRNA:20   AAC-AUAUAUAUACACACACA   1
  |||-|||||||||||||||||
targets:238   UUGAUAUAUAUAUGUGUGUGU   258

2.0 PREDICTED: Glycine max ethylene-responsive transcription factor ERF114-like (LOC100787091), mRNA ethylene-responsive transcription factor ERF114-like(LOC100787091) coding protein psRNATarget
XM_003535700.3
ncRNA:20   AACA-UAUAUAUACACACACA   1
  *|||-||||||||||||||||
targets:67   AUGUUAUAUAUAUGUGUGUGU   87

2.0 PREDICTED: Glycine max probable inorganic phosphate transporter 1-3 (LOC100795623), mRNA probable inorganic phosphate transporter 1-3(LOC100795623) coding protein psRNATarget
XM_003520603.3
ncRNA:20   AAC-AUAUAUAUACACACACA   1
  *||-|||||||||||||||||
targets:440   AUGAUAUAUAUAUGUGUGUGU   460

2.0 PREDICTED: Glycine max auxin-induced protein 15A-like (LOC100814645), mRNA auxin-induced protein 15A-like(LOC100814645) coding protein psRNATarget
NM_001251722.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  ***|||||||||||||||||
targets:512   CAAUAUAUAUAUGUGUGUGU   531

2.0 Glycine max uncharacterized LOC100305657 (LOC100305657), mRNA uncharacterized LOC100305657(LOC100305657) coding protein psRNATarget
BT089372.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  ***|||||||||||||||||
targets:512   CAAUAUAUAUAUGUGUGUGU   531

2.0 Soybean clone JCVI-FLGm-1F12 unknown mRNA NA coding protein psRNATarget
XM_006576762.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*||||||||||||||||*
targets:3806   AUAUAUAUAUAUGUGUGUGG   3825

2.0 PREDICTED: Glycine max uncharacterized LOC100817296 (LOC100817296), transcript variant X1, mRNA uncharacterized LOC100817296(LOC100817296) coding protein psRNATarget
XM_003520472.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*||||||||||||||||*
targets:3800   AUAUAUAUAUAUGUGUGUGG   3819

2.0 PREDICTED: Glycine max uncharacterized LOC100817296 (LOC100817296), transcript variant X2, mRNA uncharacterized LOC100817296(LOC100817296) coding protein psRNATarget
XM_003516344.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*||||||||||||||||*
targets:1187   AUAUAUAUAUAUGUGUGUGG   1206

2.0 PREDICTED: Glycine max abscisic acid receptor PYL4-like (LOC100788199), mRNA abscisic acid receptor PYL4-like(LOC100788199) coding protein psRNATarget
XM_006595786.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*||||||||||||||||*
targets:90   CUAUAUAUAUAUGUGUGUGA   109

2.0 PREDICTED: Glycine max B3 domain-containing protein REM20-like (LOC100810634), transcript variant X3, mRNA B3 domain-containing protein REM20-like(LOC100810634) coding protein psRNATarget
XM_006606099.2
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|*||||||||||||||||*
targets:820   AUAUAUAUAUAUGUGUGUGC   839

2.0 PREDICTED: Glycine max vacuolar iron transporter homolog 4-like (LOC100814343), mRNA vacuolar iron transporter homolog 4-like(LOC100814343) coding protein psRNATarget
XM_003535717.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||=|||||||||*|||
targets:1733   CUGUAUGUAUAUGUGUAUGU   1752

2.5 PREDICTED: Glycine max sugar transport protein 10-like (LOC100807308), mRNA sugar transport protein 10-like(LOC100807308) coding protein psRNATarget
XM_003524253.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||=|=|||||||||||
targets:1465   GUGUAUGUGUAUGUGUGUGU   1484

2.5 PREDICTED: Glycine max transcription factor HEC3-like (LOC100775296), mRNA transcription factor HEC3-like(LOC100775296) coding protein psRNATarget
XM_014776643.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||=|||||=|||||||||
targets:581   GUGUGUAUAUGUGUGUGUGU   600

2.5 PREDICTED: Glycine max ras-related protein Rab-3C-like (LOC106798946), transcript variant X1, mRNA ras-related protein Rab-3C-like(LOC106798946) coding protein psRNATarget
XM_014769429.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||*|||||||=|||||||||
targets:129   UUAUAUAUAUGUGUGUGUGU   148

2.5 PREDICTED: Glycine max microtubule-associated protein 70-5-like (LOC100798976), mRNA microtubule-associated protein 70-5-like(LOC100798976) coding protein psRNATarget
XM_003526577.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||*|||||||=|||||||||
targets:1449   UUAUAUAUAUGUGUGUGUGU   1468

2.5 PREDICTED: Glycine max WAT1-related protein At4g08290-like (LOC100776215), mRNA WAT1-related protein At4g08290-like(LOC100776215) coding protein psRNATarget
XM_003525397.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *||*||||||=|||||||||
targets:429   GUGGAUAUAUGUGUGUGUGU   448

2.5 PREDICTED: Glycine max uncharacterized LOC100776932 (LOC100776932), transcript variant X1, mRNA uncharacterized LOC100776932(LOC100776932) coding protein psRNATarget
XM_003519154.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||=|||||||||||||*|
targets:1166   AUGUGUAUAUAUGUGUGUUU   1185

2.5 PREDICTED: Glycine max uncharacterized LOC100812670 (LOC100812670), mRNA uncharacterized LOC100812670(LOC100812670) coding protein psRNATarget
XM_003517470.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  ||*|||||||||||||||*|
targets:1826   UUAUAUAUAUAUGUGUGUAU   1845

2.5 PREDICTED: Glycine max hexokinase-3-like (LOC100776994), mRNA hexokinase-3-like(LOC100776994) coding protein psRNATarget
BT092540.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  |*||||||||*|||||||||
targets:70   UCGUAUAUAUCUGUGUGUGU   89

2.5 Soybean clone JCVI-FLGm-11O1 unknown mRNA NA coding protein psRNATarget
XM_003526897.3
ncRNA:20   AACAUAUAUAUACACACACA   1
  *|||||||||||||*||||*
targets:771   AUGUAUAUAUAUGUAUGUGG   790

2.5 PREDICTED: Glycine max HVA22-like protein e (LOC100813655), transcript variant X3, mRNA HVA22-like protein e(LOC100813655) coding protein psRNATarget
AK285599.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  |***||||||||||||||||
targets:1294   UAUAAUAUAUAUGUGUGUGU   1313

3.0 Glycine max cDNA, clone: GMFL01-13-E14 NA coding protein psRNATarget
XM_014769370.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  ****||||||||||||||||
targets:844   ACCAAUAUAUAUGUGUGUGU   863

3.0 PREDICTED: Glycine max uncharacterized LOC100817641 (LOC100817641), transcript variant X1, mRNA uncharacterized LOC100817641(LOC100817641) coding protein psRNATarget
AK243845.1
ncRNA:20   AACAUAUAUAUACACACACA   1
  |***||||||||||||||||
targets:1283   UAUAAUAUAUAUGUGUGUGU   1302

3.0 Glycine max cDNA, clone: GMFL01-01-G14 NA coding protein psRNATarget
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