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BaseInfo

ncRNA ID	novel_gma_miR3248
Species	Glycine max
Class	miRNA
Genome position	Chr8:12098776-12098961 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451670
Length	20
Mature sequence(if miRNA)	167 - UGAAACAAAAGAAAAAAAAA - 186
Stem-loop(if miRNA)	--A            C                   -A        U   ---G    U      C         CU     UUAUUAUUC     A    UUUUUUUUUUUG UUUAGUUCUUAUAAAAUGU  UUAUUUUA UUU    UCUU AAAAUA UUUAGAUAA  UUUUA         AAAAU U    |||||||||||| |||||||||||||||||||  |||||||| |||    |||| |||||| |||||||||  |||||         |||||    AAAAAAGAAAAC AAGUUAGGAAUAUUUUAUA  AAUAAAAU AAA    AGAA UUUUGU AAAUUUGUU  GAAAU         UUUUA U AAA            A                   CA        U   AGAA    -      A         AU     -UUAUCAUU     U
Stem-loop sequence	AUUUUUUUUUUUGCUUUAGUUCUUAUAAAAUGUAUUAUUUUAUUUUGUCUUUAAAAUACUUUAGAUAACUUUUUAUUAUUAUUCAAAAUAUUUAUUUUUUACUAUUUAAAGUAUUGUUUAAAAUGUUUUAAGAAAGAAAAUUAAAAUAAACAUAUUUUAUAAGGAUUGAAACAAAAGAAAAAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003535996.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||||||||||||| targets:262   UUUUUUUUUCUUUUGUUUCA   281 Target Full Sequence	0.0	PREDICTED: Glycine max homeobox protein knotted-1-like 10 (LOC100786114), transcript variant X1, mRNA	homeobox protein knotted-1-like 10(LOC100786114)	coding protein	psRNATarget
XM_003526969.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||| targets:1851   UUUUUUUUUUUUUUGUUUCA   1870 Target Full Sequence	1.5	PREDICTED: Glycine max dof zinc finger protein DOF5.6-like (LOC100806697), mRNA	dof zinc finger protein DOF5.6-like(LOC100806697)	coding protein	psRNATarget
XM_003544726.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||| targets:289   UUUUUUUUUUUUUUGUUUCA   308 Target Full Sequence	1.5	PREDICTED: Glycine max ethylene-responsive transcription factor 3 (LOC100820249), mRNA	ethylene-responsive transcription factor 3(LOC100820249)	coding protein	psRNATarget
BT095268.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||| targets:11   UUUUUUUUUUUUUUGUUUCA   30 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-19A18 unknown mRNA	NA	coding protein	psRNATarget
BT097330.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||| targets:6   UUUUUUUUUUUUUUGUUUCA   25 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-21L6 unknown mRNA	NA	coding protein	psRNATarget
XM_006587783.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   *||||||||=|||||||||| targets:320   AUUUUUUUUUUUUUGUUUCA   339 Target Full Sequence	1.5	PREDICTED: Glycine max SKP1-like protein 21 (LOC100809439), transcript variant X1, mRNA	SKP1-like protein 21(LOC100809439)	coding protein	psRNATarget
XM_014771906.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||||||||||*|| targets:90   UUUUUUUUUCUUUUGUUACA   109 Target Full Sequence	1.5	PREDICTED: Glycine max protein QUIRKY-like (LOC100800242), transcript variant X2, mRNA	protein QUIRKY-like(LOC100800242)	coding protein	psRNATarget
XM_006606893.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:2514   UUUUUUUUUCUUUUUUUUCA   2533 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100817358 (LOC100817358), transcript variant X1, mRNA	uncharacterized LOC100817358(LOC100817358)	coding protein	psRNATarget
XM_003556891.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:2478   UUUUUUUUUCUUUUUUUUCA   2497 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100817358 (LOC100817358), transcript variant X2, mRNA	uncharacterized LOC100817358(LOC100817358)	coding protein	psRNATarget
XM_003520033.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:2067   UUUUUUUUUCUUUUCUUUCA   2086 Target Full Sequence	1.5	PREDICTED: Glycine max cyclic dof factor 1-like (LOC100788246), mRNA	cyclic dof factor 1-like(LOC100788246)	coding protein	psRNATarget
BT095512.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:1481   UUUUUUUUUCUUUUUUUUCA   1500 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-25O13 unknown mRNA	NA	coding protein	psRNATarget
NM_001255674.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:1481   UUUUUUUUUCUUUUUUUUCA   1500 Target Full Sequence	1.5	Glycine max protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like (LOC100783283), mRNA	protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic-like(LOC100783283)	coding protein	psRNATarget
XM_014769666.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:30   UUUUUUUUUCAUUUGUUUCA   49 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102667350 (LOC102667350), transcript variant X1, mRNA	uncharacterized LOC102667350(LOC102667350)	coding protein	psRNATarget
XM_006574965.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:88   UUUUUUUUUCAUUUGUUUCA   107 Target Full Sequence	1.5	PREDICTED: Glycine max C2 and GRAM domain-containing protein At1g03370-like (LOC100812866), transcript variant X5, mRNA	C2 and GRAM domain-containing protein At1g03370-like(LOC100812866)	coding protein	psRNATarget
XM_006574963.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:88   UUUUUUUUUCAUUUGUUUCA   107 Target Full Sequence	1.5	PREDICTED: Glycine max C2 and GRAM domain-containing protein At1g03370-like (LOC100812866), transcript variant X2, mRNA	C2 and GRAM domain-containing protein At1g03370-like(LOC100812866)	coding protein	psRNATarget
BT098663.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||||||*|||||| targets:9   UUUUUUUUUCUUUCGUUUCA   28 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-23G8 unknown mRNA	NA	coding protein	psRNATarget
XM_006574964.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:88   UUUUUUUUUCAUUUGUUUCA   107 Target Full Sequence	1.5	PREDICTED: Glycine max C2 and GRAM domain-containing protein At1g03370-like (LOC100812866), transcript variant X3, mRNA	C2 and GRAM domain-containing protein At1g03370-like(LOC100812866)	coding protein	psRNATarget
XM_014767018.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:88   UUUUUUUUUCAUUUGUUUCA   107 Target Full Sequence	1.5	PREDICTED: Glycine max C2 and GRAM domain-containing protein At1g03370-like (LOC100812866), transcript variant X4, mRNA	C2 and GRAM domain-containing protein At1g03370-like(LOC100812866)	coding protein	psRNATarget
XM_014767023.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:88   UUUUUUUUUCAUUUGUUUCA   107 Target Full Sequence	1.5	PREDICTED: Glycine max C2 and GRAM domain-containing protein At1g03370-like (LOC100812866), transcript variant X6, mRNA	C2 and GRAM domain-containing protein At1g03370-like(LOC100812866)	coding protein	psRNATarget
BT098036.1	ncRNA:19   AAAAAAAAGAAAACAAAGU   1   ||||||||=|||||||||| targets:1   UUUUUUUUUUUUUGUUUCA   19 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-11P8 unknown mRNA	NA	coding protein	psRNATarget
BT094785.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||| targets:13   UUUUUUUUUCUUUUUUUUCA   32 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-6M19 unknown mRNA	NA	coding protein	psRNATarget
XM_014769667.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||*||||||||| targets:33   UUUUUUUUUCAUUUGUUUCA   52 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102667350 (LOC102667350), transcript variant X2, mRNA	uncharacterized LOC102667350(LOC102667350)	coding protein	psRNATarget
BT098345.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||= targets:2   UUUUUUUUUUUUUUGUUUCG   21 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-12I10 unknown mRNA	NA	coding protein	psRNATarget
XM_003549462.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||* targets:2210   UUUUUUUUUUUUUUGUUUCC   2229 Target Full Sequence	2.5	PREDICTED: Glycine max RING-H2 finger protein ATL13-like (LOC100812651), mRNA	RING-H2 finger protein ATL13-like(LOC100812651)	coding protein	psRNATarget
XM_006599184.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||||||=* targets:868   UUUUUUUUUCUUUUGUUUUU   887 Target Full Sequence	2.5	PREDICTED: Glycine max N-acylphosphatidylethanolamine synthase-like (LOC100810131), transcript variant X1, mRNA	N-acylphosphatidylethanolamine synthase-like(LOC100810131)	coding protein	psRNATarget
XM_003528836.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||* targets:1809   UUUUUUUUUUUUUUGUUUCU   1828 Target Full Sequence	2.5	PREDICTED: Glycine max F-box protein PP2-A13-like (LOC100814033), mRNA	F-box protein PP2-A13-like(LOC100814033)	coding protein	psRNATarget
XM_006594464.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||||||=* targets:167   UUUUUUUUUCUUUUGUUUUU   186 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase STY8-like (LOC100806334), transcript variant X2, mRNA	serine/threonine-protein kinase STY8-like(LOC100806334)	coding protein	psRNATarget
XM_006594463.2	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||||||=* targets:168   UUUUUUUUUCUUUUGUUUUU   187 Target Full Sequence	2.5	PREDICTED: Glycine max serine/threonine-protein kinase STY8-like (LOC100806334), transcript variant X1, mRNA	serine/threonine-protein kinase STY8-like(LOC100806334)	coding protein	psRNATarget
XM_003556305.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||||||=|||||||||* targets:1019   UUUUUUUUUUUUUUGUUUCC   1038 Target Full Sequence	2.5	PREDICTED: Glycine max ethylene-responsive transcription factor 1B-like (LOC100790598), mRNA	ethylene-responsive transcription factor 1B-like(LOC100790598)	coding protein	psRNATarget
XM_003527050.3	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||||||=* targets:743   UUUUUUUUUCUUUUGUUUUU   762 Target Full Sequence	2.5	PREDICTED: Glycine max auxin-induced protein 15A (LOC100805634), mRNA	auxin-induced protein 15A(LOC100805634)	coding protein	psRNATarget
XM_014767469.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   |||||*|||=|||||||||| targets:36   UUUUUCUUUUUUUUGUUUCA   55 Target Full Sequence	2.5	PREDICTED: Glycine max protein QUIRKY-like (LOC100809753), transcript variant X2, mRNA	protein QUIRKY-like(LOC100809753)	coding protein	psRNATarget
BT099079.1	ncRNA:20   AAAAAAAAAGAAAACAAAGU   1   ||||||||||||||*||||= targets:8   UUUUUUUUUCUUUUUUUUCG   27 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-23J1 unknown mRNA	NA	coding protein	psRNATarget
XM_003554074.3	ncRNA:20   AAAAAAAAAGAAAACA-AAGU   1   ||||||||||||||||-|||| targets:715   UUUUUUUUUCUUUUGUGUUCA   735 Target Full Sequence	3.0	PREDICTED: Glycine max F-box protein At2g26850-like (LOC100806109), mRNA	F-box protein At2g26850-like(LOC100806109)	coding protein	psRNATarget
XM_003537403.3	ncRNA:20   AAAAAAAAAGAAAAC-AAAGU   1   |||||||||||||||-||||| targets:88   UUUUUUUUUCUUUUGGUUUCA   108 Target Full Sequence	3.0	PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X1, mRNA	protein DA1-related 1-like(LOC100778105)	coding protein	psRNATarget
XM_014763867.1	ncRNA:20   AAAAAAAAAGAAAAC-AAAGU   1   |||||||||||||||-||||| targets:91   UUUUUUUUUCUUUUGGUUUCA   111 Target Full Sequence	3.0	PREDICTED: Glycine max protein DA1-related 1-like (LOC100778105), transcript variant X6, mRNA	protein DA1-related 1-like(LOC100778105)	coding protein	psRNATarget
XM_003554035.3	ncRNA:20   AAAAAA-AAAGAAAACAAAGU   1   ||||||-|||||||||||||* targets:2492   UUUUUUCUUUCUUUUGUUUCU   2512 Target Full Sequence	3.0	PREDICTED: Glycine max UBP1-associated protein 2A-like (LOC100784200), transcript variant X1, mRNA	UBP1-associated protein 2A-like(LOC100784200)	coding protein	psRNATarget