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BaseInfo

ncRNA ID novel_gma_miR3245
Species Glycine max
Class miRNA
Genome position Chr8:8819845-8819892 [+]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 20
Mature sequence(if miRNA) 29 - UUACCCUUGCAUAUACAAAG - 48
Stem-loop(if miRNA) --    -       A    UG    
  UUGU UAUGCGA GGUA  GGACG
  |||| ||||||| ||||  ||||C
  AACA AUACGUU CCAU  UCUGA
GA    U       C    --    
Stem-loop sequence UUGUUAUGCGAAGGUAUGGGACGCAGUCUUACCCUUGCAUAUACAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772480.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  ||||||||||||||||||||
targets:1340   CUUUGUAUAUGCAAGGGUAA   1359

0.0 PREDICTED: Glycine max uncharacterized LOC100809711 (LOC100809711), mRNA uncharacterized LOC100809711(LOC100809711) coding protein psRNATarget
XM_014774528.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  ||||||||||||||||||||
targets:4494   CUUUGUAUAUGCAAGGGUAA   4513

0.0 PREDICTED: Glycine max probable cyclic nucleotide-gated ion channel 14 (LOC100801879), mRNA probable cyclic nucleotide-gated ion channel 14(LOC100801879) coding protein psRNATarget
BT099449.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:236   CUUUGCAUAUGCAAGGGUAA   255

1.0 Soybean clone JCVI-FLGm-16P16 unknown mRNA NA coding protein psRNATarget
XM_003531162.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:709   CUUUGCAUAUGCAAGGGUAA   728

1.0 PREDICTED: Glycine max ribosomal protein S19, mitochondrial-like (LOC100782150), mRNA ribosomal protein S19, mitochondrial-like(LOC100782150) coding protein psRNATarget
BT093604.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:575   CUUUGCAUAUGCAAGGGUAA   594

1.0 Soybean clone JCVI-FLGm-17D19 unknown mRNA NA coding protein psRNATarget
XM_006591787.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1102   CUUUGCAUAUGCAAGGGUAA   1121

1.0 PREDICTED: Glycine max uncharacterized LOC100527645 (LOC100527645), transcript variant X2, mRNA uncharacterized LOC100527645(LOC100527645) coding protein psRNATarget
XM_014770084.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:978   CUUUGCAUAUGCAAGGGUAA   997

1.0 PREDICTED: Glycine max uncharacterized LOC106796781 (LOC106796781), mRNA uncharacterized LOC106796781(LOC106796781) coding protein psRNATarget
XM_014775624.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1367   CUUUGCAUAUGCAAGGGUAA   1386

1.0 PREDICTED: Glycine max putative protein TPRXL (LOC102661448), mRNA putative protein TPRXL(LOC102661448) coding protein psRNATarget
XM_003541303.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:152   CUUUGCAUAUGCAAGGGUAA   171

1.0 PREDICTED: Glycine max ethylene-responsive transcription factor 1B-like (LOC100812017), mRNA ethylene-responsive transcription factor 1B-like(LOC100812017) coding protein psRNATarget
XM_003545657.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1577   CUUUGCAUAUGCAAGGGUAA   1596

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like (LOC100811179), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like(LOC100811179) coding protein psRNATarget
XM_006597295.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1584   CUUUGCAUAUGCAAGGGUAA   1603

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like (LOC100811179), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like(LOC100811179) coding protein psRNATarget
XM_006589081.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1536   CUUUGCAUAUGCAAGGGUAA   1555

1.0 PREDICTED: Glycine max microtubule-binding protein TANGLED-like (LOC100817280), mRNA microtubule-binding protein TANGLED-like(LOC100817280) coding protein psRNATarget
XM_014764894.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1824   CUUUGCAUAUGCAAGGGUAA   1843

1.0 PREDICTED: Glycine max protein disulfide-isomerase 5-4-like (LOC100787595), mRNA protein disulfide-isomerase 5-4-like(LOC100787595) coding protein psRNATarget
XM_003530855.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1344   CUUUGCAUAUGCAAGGGUAA   1363

1.0 PREDICTED: Glycine max actin cytoskeleton-regulatory complex protein PAN1-like (LOC100800517), mRNA actin cytoskeleton-regulatory complex protein PAN1-like(LOC100800517) coding protein psRNATarget
AK243804.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1750   CUUUGCAUAUGCAAGGGUAA   1769

1.0 Glycine max cDNA, clone: GMFL01-01-E21 NA coding protein psRNATarget
XM_014772912.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:257   CUUUGCAUAUGCAAGGGUAA   276

1.0 PREDICTED: Glycine max uncharacterized LOC100789877 (LOC100789877), transcript variant X3, mRNA uncharacterized LOC100789877(LOC100789877) coding protein psRNATarget
XM_006577880.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:2301   CUUUGCAUAUGCAAGGGUAA   2320

1.0 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g42310, mitochondrial (LOC100808427), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At5g42310, mitochondrial(LOC100808427) coding protein psRNATarget
AK244196.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1022   CUUUGCAUAUGCAAGGGUAA   1041

1.0 Glycine max cDNA, clone: GMFL01-02-F18 NA coding protein psRNATarget
NM_001249998.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:2187   CUUUGCAUAUGCAAGGGUAA   2206

1.0 Glycine max uncharacterized LOC100527500 (LOC100527500), mRNA uncharacterized LOC100527500(LOC100527500) coding protein psRNATarget
XM_006600051.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:2518   CUUUGCAUAUGCAAGGGUAA   2537

1.0 PREDICTED: Glycine max peroxisomal fatty acid beta-oxidation multifunctional protein (LOC100170754), transcript variant X1, mRNA peroxisomal fatty acid beta-oxidation multifunctional protein(LOC100170754) coding protein psRNATarget
XM_006595801.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1008   CUUUGCAUAUGCAAGGGUAA   1027

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X3, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_014766568.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1155   CUUUGCAUAUGCAAGGGUAA   1174

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X2, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_006595799.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1610   CUUUGCAUAUGCAAGGGUAA   1629

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X4, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_006595798.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1611   CUUUGCAUAUGCAAGGGUAA   1630

1.0 PREDICTED: Glycine max uncharacterized LOC102662071 (LOC102662071), transcript variant X1, mRNA uncharacterized LOC102662071(LOC102662071) coding protein psRNATarget
XM_014768453.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:1883   CUUUGCAUAUGCAAGGGUAA   1902

1.0 PREDICTED: Glycine max eukaryotic peptide chain release factor subunit 1-3 (LOC106796341), mRNA eukaryotic peptide chain release factor subunit 1-3(LOC106796341) coding protein psRNATarget
XM_006604000.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:3696   CUUUGCAUAUGCAAGGGUAA   3715

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X2, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604003.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:3702   CUUUGCAUAUGCAAGGGUAA   3721

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X5, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604002.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:3772   CUUUGCAUAUGCAAGGGUAA   3791

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X4, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_006604001.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:3823   CUUUGCAUAUGCAAGGGUAA   3842

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X3, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_003555038.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||||||||||||||
targets:3907   CUUUGCAUAUGCAAGGGUAA   3926

1.0 PREDICTED: Glycine max histone-lysine N-methyltransferase ATX5-like (LOC100775276), transcript variant X1, mRNA histone-lysine N-methyltransferase ATX5-like(LOC100775276) coding protein psRNATarget
XM_014777562.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  *||||*||||||||||||||
targets:1246   AUUUGCAUAUGCAAGGGUAA   1265

1.0 PREDICTED: Glycine max dof zinc finger protein DOF2.2-like (LOC100814555), mRNA dof zinc finger protein DOF2.2-like(LOC100814555) coding protein psRNATarget
XM_006602962.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*|||||=||||||||
targets:1816   CUUUGCAUAUGUAAGGGUAA   1835

2.5 PREDICTED: Glycine max 60S ribosomal protein L23a-like (LOC100777933), transcript variant X2, mRNA 60S ribosomal protein L23a-like(LOC100777933) coding protein psRNATarget
XM_003552626.3
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*|||||=||||||||
targets:1834   CUUUGCAUAUGUAAGGGUAA   1853

2.5 PREDICTED: Glycine max 60S ribosomal protein L23a-like (LOC100777933), transcript variant X1, mRNA 60S ribosomal protein L23a-like(LOC100777933) coding protein psRNATarget
XM_014769250.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||*|||||||||||
targets:477   CUUUGCAUUUGCAAGGGUAA   496

2.5 PREDICTED: Glycine max protein trichome birefringence-like 45 (LOC102669374), transcript variant X2, mRNA protein trichome birefringence-like 45(LOC102669374) coding protein psRNATarget
XM_014769247.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*||*|||||||||||
targets:751   CUUUGCAUUUGCAAGGGUAA   770

2.5 PREDICTED: Glycine max protein trichome birefringence-like 45 (LOC102669374), transcript variant X1, mRNA protein trichome birefringence-like 45(LOC102669374) coding protein psRNATarget
XM_014767967.1
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*|||||||||*||||
targets:1582   CUUUGCAUAUGCAAGAGUAA   1601

2.5 PREDICTED: Glycine max 1-aminocyclopropane-1-carboxylate oxidase homolog 1 (LOC100789941), transcript variant X2, mRNA 1-aminocyclopropane-1-carboxylate oxidase homolog 1(LOC100789941) coding protein psRNATarget
XM_006592080.2
ncRNA:20   GAAACAUAUACGUUCCCAUU   1
  |||||*|||||||||||*||
targets:4644   CUUUGCAUAUGCAAGGGCAA   4663

2.5 PREDICTED: Glycine max flowering time control protein FPA-like (LOC100795342), transcript variant X2, mRNA flowering time control protein FPA-like(LOC100795342) coding protein psRNATarget
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