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BaseInfo

ncRNA ID novel_gma_miR3244
Species Glycine max
Class miRNA
Genome position Chr8:2070591-2070704 [-]
Reference genome Glycine_max_v2.0
Source SRR1451670
Length 21
Mature sequence(if miRNA) 94 - UGUAUAUAUAUGUGUGUAUAU - 114
Stem-loop(if miRNA)                                             G          A
UGUAUAUAUAUGUGUGUAUAUAUAUAUAUGUAUGUGUAUGUAUA AUAUAUAUAU U
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
AUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAU UAUAUAUAUA A
                                            A          U
Stem-loop sequence UGUAUAUAUAUGUGUGUAUAUAUAUAUAUGUAUGUGUAUGUAUAGAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003528674.3
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |*|||||||||||||||||||
targets:1500   ACAUACACACAUAUAUAUACA   1520

0.0 PREDICTED: Glycine max putative NAC domain-containing protein 94 (LOC100812779), mRNA putative NAC domain-containing protein 94(LOC100812779) coding protein psRNATarget
XM_014765354.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |*|||||||||||||||||=|
targets:1892   AAAUACACACAUAUAUAUAUA   1912

1.5 PREDICTED: Glycine max ATP-dependent DNA helicase pfh1-like (LOC102659864), mRNA ATP-dependent DNA helicase pfh1-like(LOC102659864) coding protein psRNATarget
XM_003528016.3
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||||=||||||||||||=
targets:174   AUAUACAUACAUAUAUAUACG   194

2.0 PREDICTED: Glycine max beta-galactosidase 6-like (LOC100818637), mRNA beta-galactosidase 6-like(LOC100818637) coding protein psRNATarget
XM_006583178.2
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:3207   AUAUAUACACAUGUAUAUACA   3227

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X6, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_006583179.2
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:3040   AUAUAUACACAUGUAUAUACA   3060

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X1, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_014777750.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:3023   AUAUAUACACAUGUAUAUACA   3043

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X7, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_014777746.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:2989   AUAUAUACACAUGUAUAUACA   3009

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X2, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_014777749.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:2986   AUAUAUACACAUGUAUAUACA   3006

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X5, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_014777748.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:2635   AUAUAUACACAUGUAUAUACA   2655

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X4, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
XM_014777747.1
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||=||||||=||||||||
targets:2622   AUAUAUACACAUGUAUAUACA   2642

2.5 PREDICTED: Glycine max putative RING-H2 finger protein ATL21A (LOC100794143), transcript variant X3, mRNA putative RING-H2 finger protein ATL21A(LOC100794143) coding protein psRNATarget
NM_001249797.2
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||||=|||||||||||=|
targets:80   AUAUACAUACAUAUAUAUAUA   100

2.5 Glycine max 6-phosphogluconate dehydrogenase (GND), mRNA 6-phosphogluconate dehydrogenase(GND) coding protein psRNATarget
XM_003539020.3
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||||=|||||||||||=|
targets:1593   AUAUACAUACAUAUAUAUAUA   1613

2.5 PREDICTED: Glycine max uncharacterized LOC100787401 (LOC100787401), mRNA uncharacterized LOC100787401(LOC100787401) coding protein psRNATarget
XM_003550313.3
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||||||=|||||||||||=|
targets:1722   AUAUACAUACAUAUAUAUAUA   1742

2.5 PREDICTED: Glycine max F-box/FBD/LRR-repeat protein At1g13570-like (LOC100782183), mRNA F-box/FBD/LRR-repeat protein At1g13570-like(LOC100782183) coding protein psRNATarget
XM_006603850.2
ncRNA:21   UAUAUGUGUGUAUAUAUAUGU   1
  |||*|||||||||||||||=|
targets:317   AUACACACACAUAUAUAUAUA   337

2.5 PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC102662105), mRNA protein LONGIFOLIA 1-like(LOC102662105) coding protein psRNATarget
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